Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2990 and EX28DRAFT_2991 overlap by 4 nucleotides EX28DRAFT_2991 and EX28DRAFT_2992 are separated by 3 nucleotides EX28DRAFT_2992 and EX28DRAFT_2993 overlap by 8 nucleotides EX28DRAFT_2993 and EX28DRAFT_2994 are separated by 63 nucleotides EX28DRAFT_2994 and EX28DRAFT_2995 are separated by 82 nucleotides
EX28DRAFT_2990: EX28DRAFT_2990 - Predicted integral membrane protein, at 301,535 to 302,101
_2990
EX28DRAFT_2991: EX28DRAFT_2991 - TIGR00251 family protein, at 302,098 to 302,394
_2991
EX28DRAFT_2992: EX28DRAFT_2992 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 302,398 to 302,991
_2992
EX28DRAFT_2993: EX28DRAFT_2993 - putative oxygen-independent coproporphyrinogen III oxidase, at 302,984 to 304,126
_2993
EX28DRAFT_2994: EX28DRAFT_2994 - Uncharacterized protein conserved in bacteria, at 304,190 to 304,528
_2994
EX28DRAFT_2995: EX28DRAFT_2995 - Protein of unknown function (DUF2884), at 304,611 to 305,327
_2995
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 302.021 kb on + strand, within EX28DRAFT_2990 at 302.022 kb on - strand, within EX28DRAFT_2990 at 302.068 kb on + strand at 302.143 kb on + strand, within EX28DRAFT_2991 at 302.144 kb on - strand, within EX28DRAFT_2991 at 302.144 kb on - strand, within EX28DRAFT_2991 at 302.144 kb on - strand, within EX28DRAFT_2991 at 302.144 kb on - strand, within EX28DRAFT_2991 at 302.145 kb on + strand, within EX28DRAFT_2991 at 302.199 kb on - strand, within EX28DRAFT_2991 at 302.325 kb on + strand, within EX28DRAFT_2991 at 302.326 kb on - strand, within EX28DRAFT_2991 at 302.326 kb on - strand, within EX28DRAFT_2991 at 302.326 kb on - strand, within EX28DRAFT_2991 at 302.326 kb on - strand, within EX28DRAFT_2991 at 302.393 kb on - strand at 302.393 kb on - strand at 302.460 kb on - strand, within EX28DRAFT_2992 at 302.460 kb on - strand, within EX28DRAFT_2992 at 302.460 kb on - strand, within EX28DRAFT_2992 at 302.724 kb on - strand, within EX28DRAFT_2992 at 302.769 kb on + strand, within EX28DRAFT_2992 at 302.966 kb on + strand at 303.013 kb on + strand at 303.014 kb on - strand at 303.014 kb on - strand at 303.141 kb on - strand, within EX28DRAFT_2993 at 303.463 kb on + strand, within EX28DRAFT_2993 at 303.667 kb on - strand, within EX28DRAFT_2993 at 303.667 kb on - strand, within EX28DRAFT_2993 at 303.720 kb on - strand, within EX28DRAFT_2993 at 303.744 kb on - strand, within EX28DRAFT_2993 at 304.053 kb on - strand at 304.086 kb on + strand at 304.237 kb on - strand, within EX28DRAFT_2994 at 304.277 kb on + strand, within EX28DRAFT_2994 at 304.279 kb on + strand, within EX28DRAFT_2994 at 304.279 kb on + strand, within EX28DRAFT_2994 at 304.279 kb on + strand, within EX28DRAFT_2994 at 304.279 kb on + strand, within EX28DRAFT_2994 at 304.310 kb on + strand, within EX28DRAFT_2994 at 304.311 kb on - strand, within EX28DRAFT_2994 at 304.311 kb on - strand, within EX28DRAFT_2994 at 304.311 kb on - strand, within EX28DRAFT_2994 at 304.311 kb on - strand, within EX28DRAFT_2994 at 304.311 kb on - strand, within EX28DRAFT_2994 at 304.311 kb on - strand, within EX28DRAFT_2994 at 304.388 kb on + strand, within EX28DRAFT_2994 at 304.437 kb on + strand, within EX28DRAFT_2994 at 304.437 kb on + strand, within EX28DRAFT_2994 at 304.450 kb on + strand, within EX28DRAFT_2994 at 304.479 kb on + strand, within EX28DRAFT_2994 at 304.489 kb on + strand, within EX28DRAFT_2994 at 304.489 kb on + strand, within EX28DRAFT_2994 at 304.526 kb on + strand at 304.556 kb on + strand at 304.556 kb on + strand at 304.613 kb on - strand at 304.617 kb on - strand at 304.617 kb on - strand at 304.894 kb on + strand, within EX28DRAFT_2995 at 304.895 kb on - strand, within EX28DRAFT_2995
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 302,021 + EX28DRAFT_2990 0.86 +1.2 302,022 - EX28DRAFT_2990 0.86 -2.5 302,068 + -2.1 302,143 + EX28DRAFT_2991 0.15 -1.3 302,144 - EX28DRAFT_2991 0.15 -1.1 302,144 - EX28DRAFT_2991 0.15 -1.9 302,144 - EX28DRAFT_2991 0.15 +2.7 302,144 - EX28DRAFT_2991 0.15 -1.4 302,145 + EX28DRAFT_2991 0.16 -1.1 302,199 - EX28DRAFT_2991 0.34 +1.2 302,325 + EX28DRAFT_2991 0.76 -1.6 302,326 - EX28DRAFT_2991 0.77 -1.0 302,326 - EX28DRAFT_2991 0.77 -2.8 302,326 - EX28DRAFT_2991 0.77 -0.6 302,326 - EX28DRAFT_2991 0.77 -0.3 302,393 - -0.2 302,393 - +0.2 302,460 - EX28DRAFT_2992 0.10 -0.8 302,460 - EX28DRAFT_2992 0.10 +0.5 302,460 - EX28DRAFT_2992 0.10 -1.8 302,724 - EX28DRAFT_2992 0.55 -1.6 302,769 + EX28DRAFT_2992 0.62 -0.2 302,966 + -3.9 303,013 + -0.0 303,014 - -1.1 303,014 - -0.4 303,141 - EX28DRAFT_2993 0.14 -2.8 303,463 + EX28DRAFT_2993 0.42 -2.4 303,667 - EX28DRAFT_2993 0.60 +0.6 303,667 - EX28DRAFT_2993 0.60 -3.6 303,720 - EX28DRAFT_2993 0.64 -0.8 303,744 - EX28DRAFT_2993 0.66 -2.4 304,053 - -1.4 304,086 + +0.1 304,237 - EX28DRAFT_2994 0.14 +1.2 304,277 + EX28DRAFT_2994 0.26 +2.0 304,279 + EX28DRAFT_2994 0.26 +0.2 304,279 + EX28DRAFT_2994 0.26 -0.6 304,279 + EX28DRAFT_2994 0.26 -0.2 304,279 + EX28DRAFT_2994 0.26 +1.9 304,310 + EX28DRAFT_2994 0.35 -2.7 304,311 - EX28DRAFT_2994 0.36 +0.1 304,311 - EX28DRAFT_2994 0.36 -0.3 304,311 - EX28DRAFT_2994 0.36 -2.6 304,311 - EX28DRAFT_2994 0.36 +0.6 304,311 - EX28DRAFT_2994 0.36 +0.4 304,311 - EX28DRAFT_2994 0.36 +1.4 304,388 + EX28DRAFT_2994 0.58 -0.3 304,437 + EX28DRAFT_2994 0.73 +0.4 304,437 + EX28DRAFT_2994 0.73 +1.5 304,450 + EX28DRAFT_2994 0.77 -0.7 304,479 + EX28DRAFT_2994 0.85 +1.4 304,489 + EX28DRAFT_2994 0.88 -0.5 304,489 + EX28DRAFT_2994 0.88 +0.8 304,526 + -0.3 304,556 + +1.5 304,556 + -0.1 304,613 - +0.1 304,617 - +0.3 304,617 - +2.0 304,894 + EX28DRAFT_2995 0.39 -1.1 304,895 - EX28DRAFT_2995 0.40 +0.3
Or see this region's nucleotide sequence