Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2985 and EX28DRAFT_2986 are separated by 87 nucleotides EX28DRAFT_2986 and EX28DRAFT_2987 overlap by 1 nucleotides EX28DRAFT_2987 and EX28DRAFT_2988 are separated by 10 nucleotides
EX28DRAFT_2985: EX28DRAFT_2985 - glutathione synthase (EC 6.3.2.3), at 297,792 to 298,739
_2985
EX28DRAFT_2986: EX28DRAFT_2986 - Putative transcriptional regulator, at 298,827 to 299,387
_2986
EX28DRAFT_2987: EX28DRAFT_2987 - RNAse H-fold protein YqgF, at 299,387 to 299,803
_2987
EX28DRAFT_2988: EX28DRAFT_2988 - pilus retraction protein PilT, at 299,814 to 300,794
_2988
Position (kb) 298
299
300 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 297.901 kb on - strand, within EX28DRAFT_2985 at 297.903 kb on - strand, within EX28DRAFT_2985 at 298.074 kb on + strand, within EX28DRAFT_2985 at 298.074 kb on + strand, within EX28DRAFT_2985 at 298.075 kb on - strand, within EX28DRAFT_2985 at 298.075 kb on - strand, within EX28DRAFT_2985 at 298.075 kb on - strand, within EX28DRAFT_2985 at 298.075 kb on - strand, within EX28DRAFT_2985 at 298.080 kb on + strand, within EX28DRAFT_2985 at 298.081 kb on - strand, within EX28DRAFT_2985 at 298.081 kb on - strand, within EX28DRAFT_2985 at 298.089 kb on + strand, within EX28DRAFT_2985 at 298.170 kb on + strand, within EX28DRAFT_2985 at 298.390 kb on - strand, within EX28DRAFT_2985 at 298.466 kb on + strand, within EX28DRAFT_2985 at 298.467 kb on - strand, within EX28DRAFT_2985 at 298.738 kb on - strand at 298.743 kb on - strand at 298.743 kb on - strand at 298.743 kb on - strand at 298.748 kb on + strand at 298.748 kb on + strand at 298.748 kb on + strand at 298.748 kb on + strand at 298.749 kb on - strand at 298.749 kb on - strand at 298.749 kb on - strand at 298.749 kb on - strand at 298.751 kb on + strand at 298.752 kb on - strand at 298.752 kb on - strand at 298.752 kb on - strand at 298.754 kb on + strand at 298.755 kb on - strand at 298.801 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.899 kb on + strand, within EX28DRAFT_2986 at 298.911 kb on + strand, within EX28DRAFT_2986 at 299.098 kb on + strand, within EX28DRAFT_2986 at 299.111 kb on + strand, within EX28DRAFT_2986 at 299.211 kb on + strand, within EX28DRAFT_2986 at 299.815 kb on + strand at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.966 kb on - strand, within EX28DRAFT_2988 at 300.308 kb on - strand, within EX28DRAFT_2988 at 300.308 kb on - strand, within EX28DRAFT_2988 at 300.311 kb on + strand, within EX28DRAFT_2988 at 300.312 kb on - strand, within EX28DRAFT_2988 at 300.342 kb on - strand, within EX28DRAFT_2988
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 297,901 - EX28DRAFT_2985 0.11 -4.5 297,903 - EX28DRAFT_2985 0.12 -2.5 298,074 + EX28DRAFT_2985 0.30 +0.2 298,074 + EX28DRAFT_2985 0.30 -3.5 298,075 - EX28DRAFT_2985 0.30 -1.1 298,075 - EX28DRAFT_2985 0.30 -3.8 298,075 - EX28DRAFT_2985 0.30 -1.5 298,075 - EX28DRAFT_2985 0.30 -3.1 298,080 + EX28DRAFT_2985 0.30 -2.4 298,081 - EX28DRAFT_2985 0.30 -0.7 298,081 - EX28DRAFT_2985 0.30 +0.3 298,089 + EX28DRAFT_2985 0.31 -2.6 298,170 + EX28DRAFT_2985 0.40 -1.3 298,390 - EX28DRAFT_2985 0.63 -2.3 298,466 + EX28DRAFT_2985 0.71 -0.3 298,467 - EX28DRAFT_2985 0.71 -4.7 298,738 - -1.8 298,743 - -1.2 298,743 - -0.6 298,743 - -2.3 298,748 + -1.6 298,748 + +2.3 298,748 + +1.0 298,748 + -0.3 298,749 - +0.4 298,749 - -1.4 298,749 - -3.1 298,749 - -2.1 298,751 + -1.4 298,752 - -0.3 298,752 - -0.9 298,752 - -0.3 298,754 + +0.2 298,755 - -0.1 298,801 + +1.2 298,816 + +0.3 298,816 + -1.4 298,816 + -0.6 298,816 + -0.7 298,816 + -0.1 298,899 + EX28DRAFT_2986 0.13 +0.6 298,911 + EX28DRAFT_2986 0.15 +0.2 299,098 + EX28DRAFT_2986 0.48 -1.1 299,111 + EX28DRAFT_2986 0.51 -0.9 299,211 + EX28DRAFT_2986 0.68 -0.7 299,815 + -1.8 299,965 + EX28DRAFT_2988 0.15 -3.5 299,965 + EX28DRAFT_2988 0.15 +0.2 299,965 + EX28DRAFT_2988 0.15 +0.6 299,966 - EX28DRAFT_2988 0.15 -1.4 300,308 - EX28DRAFT_2988 0.50 +7.6 300,308 - EX28DRAFT_2988 0.50 +0.0 300,311 + EX28DRAFT_2988 0.51 -0.3 300,312 - EX28DRAFT_2988 0.51 +0.1 300,342 - EX28DRAFT_2988 0.54 -3.8
Or see this region's nucleotide sequence