Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2938 and EX28DRAFT_2939 are separated by 80 nucleotides EX28DRAFT_2939 and EX28DRAFT_2940 are separated by 163 nucleotides EX28DRAFT_2940 and EX28DRAFT_2941 are separated by 38 nucleotides
EX28DRAFT_2938: EX28DRAFT_2938 - tRNA, at 249,169 to 249,242
_2938
EX28DRAFT_2939: EX28DRAFT_2939 - Membrane proteins related to metalloendopeptidases, at 249,323 to 250,066
_2939
EX28DRAFT_2940: EX28DRAFT_2940 - isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2), at 250,230 to 250,772
_2940
EX28DRAFT_2941: EX28DRAFT_2941 - Lysyl-tRNA synthetase (class II), at 250,811 to 252,328
_2941
Position (kb) 250
251 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 249.264 kb on + strand at 249.264 kb on + strand at 249.264 kb on + strand at 249.283 kb on + strand at 249.283 kb on + strand at 249.284 kb on - strand at 249.284 kb on - strand at 249.388 kb on - strand at 249.505 kb on - strand, within EX28DRAFT_2939 at 249.532 kb on + strand, within EX28DRAFT_2939 at 249.532 kb on + strand, within EX28DRAFT_2939 at 249.532 kb on + strand, within EX28DRAFT_2939 at 249.533 kb on - strand, within EX28DRAFT_2939 at 249.533 kb on - strand, within EX28DRAFT_2939 at 249.576 kb on + strand, within EX28DRAFT_2939 at 249.577 kb on - strand, within EX28DRAFT_2939 at 249.603 kb on + strand, within EX28DRAFT_2939 at 249.846 kb on + strand, within EX28DRAFT_2939 at 249.846 kb on + strand, within EX28DRAFT_2939 at 249.847 kb on - strand, within EX28DRAFT_2939 at 249.847 kb on - strand, within EX28DRAFT_2939 at 249.957 kb on + strand, within EX28DRAFT_2939 at 249.958 kb on - strand, within EX28DRAFT_2939 at 249.958 kb on - strand, within EX28DRAFT_2939 at 250.004 kb on + strand at 250.098 kb on + strand at 250.098 kb on + strand at 250.099 kb on - strand at 250.119 kb on + strand at 250.164 kb on - strand at 250.174 kb on + strand at 250.175 kb on - strand at 250.175 kb on - strand at 250.176 kb on + strand at 250.176 kb on + strand at 250.251 kb on - strand at 250.312 kb on + strand, within EX28DRAFT_2940 at 250.312 kb on + strand, within EX28DRAFT_2940 at 250.312 kb on + strand, within EX28DRAFT_2940 at 250.312 kb on + strand, within EX28DRAFT_2940 at 250.313 kb on - strand, within EX28DRAFT_2940 at 250.313 kb on - strand, within EX28DRAFT_2940 at 250.313 kb on - strand, within EX28DRAFT_2940 at 250.316 kb on + strand, within EX28DRAFT_2940 at 250.647 kb on + strand, within EX28DRAFT_2940 at 250.647 kb on + strand, within EX28DRAFT_2940 at 250.706 kb on + strand, within EX28DRAFT_2940 at 250.797 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 249,264 + -1.3 249,264 + -1.9 249,264 + +1.0 249,283 + +1.1 249,283 + -2.9 249,284 - -1.1 249,284 - -1.4 249,388 - +0.6 249,505 - EX28DRAFT_2939 0.24 -0.7 249,532 + EX28DRAFT_2939 0.28 -0.5 249,532 + EX28DRAFT_2939 0.28 +0.1 249,532 + EX28DRAFT_2939 0.28 -1.1 249,533 - EX28DRAFT_2939 0.28 +1.9 249,533 - EX28DRAFT_2939 0.28 -0.4 249,576 + EX28DRAFT_2939 0.34 -0.3 249,577 - EX28DRAFT_2939 0.34 -0.2 249,603 + EX28DRAFT_2939 0.38 -1.6 249,846 + EX28DRAFT_2939 0.70 -1.2 249,846 + EX28DRAFT_2939 0.70 +0.4 249,847 - EX28DRAFT_2939 0.70 -0.1 249,847 - EX28DRAFT_2939 0.70 +0.2 249,957 + EX28DRAFT_2939 0.85 -0.1 249,958 - EX28DRAFT_2939 0.85 -0.1 249,958 - EX28DRAFT_2939 0.85 -0.4 250,004 + +0.0 250,098 + +1.3 250,098 + +0.7 250,099 - -5.2 250,119 + +1.7 250,164 - +0.2 250,174 + -0.5 250,175 - -0.5 250,175 - +0.1 250,176 + +0.3 250,176 + -0.9 250,251 - -1.3 250,312 + EX28DRAFT_2940 0.15 +0.7 250,312 + EX28DRAFT_2940 0.15 -0.2 250,312 + EX28DRAFT_2940 0.15 +0.7 250,312 + EX28DRAFT_2940 0.15 +0.1 250,313 - EX28DRAFT_2940 0.15 -1.4 250,313 - EX28DRAFT_2940 0.15 -1.5 250,313 - EX28DRAFT_2940 0.15 +0.8 250,316 + EX28DRAFT_2940 0.16 -0.3 250,647 + EX28DRAFT_2940 0.77 +5.4 250,647 + EX28DRAFT_2940 0.77 +0.1 250,706 + EX28DRAFT_2940 0.88 -0.6 250,797 + -0.1
Or see this region's nucleotide sequence