Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2928 and EX28DRAFT_2929 are separated by 27 nucleotides EX28DRAFT_2929 and EX28DRAFT_2930 are separated by 10 nucleotides EX28DRAFT_2930 and EX28DRAFT_2931 are separated by 176 nucleotides EX28DRAFT_2931 and EX28DRAFT_2932 are separated by 3 nucleotides EX28DRAFT_2932 and EX28DRAFT_2933 are separated by 168 nucleotides
EX28DRAFT_2928: EX28DRAFT_2928 - Putative threonine efflux protein, at 239,131 to 239,736
_2928
EX28DRAFT_2929: EX28DRAFT_2929 - Predicted acetyltransferase, at 239,764 to 240,036
_2929
EX28DRAFT_2930: EX28DRAFT_2930 - Uncharacterized conserved protein, at 240,047 to 240,277
_2930
EX28DRAFT_2931: EX28DRAFT_2931 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 240,454 to 242,091
_2931
EX28DRAFT_2932: EX28DRAFT_2932 - Response regulator of citrate/malate metabolism, at 242,095 to 242,796
_2932
EX28DRAFT_2933: EX28DRAFT_2933 - ABC-type Fe3+ transport system, periplasmic component, at 242,965 to 244,053
_2933
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 239.595 kb on + strand, within EX28DRAFT_2928 at 239.595 kb on + strand, within EX28DRAFT_2928 at 239.605 kb on + strand, within EX28DRAFT_2928 at 239.605 kb on + strand, within EX28DRAFT_2928 at 239.605 kb on + strand, within EX28DRAFT_2928 at 239.606 kb on - strand, within EX28DRAFT_2928 at 239.606 kb on - strand, within EX28DRAFT_2928 at 239.669 kb on + strand, within EX28DRAFT_2928 at 239.711 kb on + strand at 239.717 kb on + strand at 239.717 kb on + strand at 239.718 kb on - strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.797 kb on - strand, within EX28DRAFT_2929 at 239.965 kb on + strand, within EX28DRAFT_2929 at 239.966 kb on - strand, within EX28DRAFT_2929 at 239.966 kb on - strand, within EX28DRAFT_2929 at 240.006 kb on - strand, within EX28DRAFT_2929 at 240.060 kb on + strand at 240.099 kb on - strand, within EX28DRAFT_2930 at 240.154 kb on + strand, within EX28DRAFT_2930 at 240.154 kb on + strand, within EX28DRAFT_2930 at 240.154 kb on + strand, within EX28DRAFT_2930 at 240.184 kb on + strand, within EX28DRAFT_2930 at 240.216 kb on + strand, within EX28DRAFT_2930 at 240.263 kb on + strand at 240.264 kb on - strand at 240.291 kb on + strand at 240.295 kb on + strand at 240.296 kb on - strand at 240.296 kb on - strand at 240.298 kb on + strand at 240.298 kb on + strand at 240.298 kb on + strand at 240.340 kb on + strand at 240.340 kb on + strand at 240.340 kb on + strand at 240.341 kb on - strand at 240.438 kb on - strand at 240.491 kb on + strand at 240.518 kb on + strand at 240.519 kb on - strand at 240.521 kb on + strand at 240.521 kb on + strand at 240.522 kb on - strand at 240.522 kb on - strand at 240.654 kb on + strand, within EX28DRAFT_2931 at 240.654 kb on + strand, within EX28DRAFT_2931 at 240.655 kb on - strand, within EX28DRAFT_2931 at 240.710 kb on - strand, within EX28DRAFT_2931 at 240.772 kb on - strand, within EX28DRAFT_2931 at 240.809 kb on + strand, within EX28DRAFT_2931 at 240.934 kb on + strand, within EX28DRAFT_2931 at 240.934 kb on + strand, within EX28DRAFT_2931 at 240.934 kb on + strand, within EX28DRAFT_2931 at 240.935 kb on - strand, within EX28DRAFT_2931 at 240.935 kb on - strand, within EX28DRAFT_2931 at 240.935 kb on - strand, within EX28DRAFT_2931 at 240.935 kb on - strand, within EX28DRAFT_2931 at 240.936 kb on + strand, within EX28DRAFT_2931 at 240.936 kb on + strand, within EX28DRAFT_2931 at 240.936 kb on + strand, within EX28DRAFT_2931 at 240.937 kb on - strand, within EX28DRAFT_2931 at 240.937 kb on - strand, within EX28DRAFT_2931 at 240.937 kb on - strand, within EX28DRAFT_2931 at 241.026 kb on + strand, within EX28DRAFT_2931 at 241.107 kb on - strand, within EX28DRAFT_2931 at 241.107 kb on - strand, within EX28DRAFT_2931 at 241.117 kb on + strand, within EX28DRAFT_2931 at 241.118 kb on - strand, within EX28DRAFT_2931 at 241.118 kb on - strand, within EX28DRAFT_2931 at 241.118 kb on - strand, within EX28DRAFT_2931 at 241.118 kb on - strand, within EX28DRAFT_2931 at 241.127 kb on + strand, within EX28DRAFT_2931 at 241.160 kb on + strand, within EX28DRAFT_2931 at 241.160 kb on + strand, within EX28DRAFT_2931 at 241.388 kb on - strand, within EX28DRAFT_2931 at 241.451 kb on - strand, within EX28DRAFT_2931 at 241.470 kb on + strand, within EX28DRAFT_2931 at 241.471 kb on - strand, within EX28DRAFT_2931 at 241.531 kb on + strand, within EX28DRAFT_2931 at 241.532 kb on - strand, within EX28DRAFT_2931 at 241.549 kb on + strand, within EX28DRAFT_2931 at 241.549 kb on + strand, within EX28DRAFT_2931 at 241.549 kb on + strand, within EX28DRAFT_2931 at 241.646 kb on - strand, within EX28DRAFT_2931 at 241.646 kb on - strand, within EX28DRAFT_2931 at 241.752 kb on + strand, within EX28DRAFT_2931 at 241.817 kb on - strand, within EX28DRAFT_2931 at 241.830 kb on + strand, within EX28DRAFT_2931 at 241.841 kb on + strand, within EX28DRAFT_2931 at 241.842 kb on - strand, within EX28DRAFT_2931 at 241.842 kb on - strand, within EX28DRAFT_2931 at 241.988 kb on - strand at 241.988 kb on - strand at 242.058 kb on + strand at 242.059 kb on - strand at 242.069 kb on + strand at 242.069 kb on + strand at 242.089 kb on + strand at 242.126 kb on + strand at 242.168 kb on - strand, within EX28DRAFT_2932 at 242.170 kb on - strand, within EX28DRAFT_2932 at 242.275 kb on + strand, within EX28DRAFT_2932 at 242.276 kb on - strand, within EX28DRAFT_2932 at 242.330 kb on - strand, within EX28DRAFT_2932 at 242.411 kb on - strand, within EX28DRAFT_2932 at 242.411 kb on - strand, within EX28DRAFT_2932 at 242.419 kb on - strand, within EX28DRAFT_2932 at 242.693 kb on - strand, within EX28DRAFT_2932 at 242.701 kb on + strand, within EX28DRAFT_2932 at 242.740 kb on + strand at 242.740 kb on + strand at 242.768 kb on + strand at 242.769 kb on - strand at 242.809 kb on + strand at 242.810 kb on - strand at 242.840 kb on + strand at 242.841 kb on - strand at 242.841 kb on - strand at 242.920 kb on - strand at 242.920 kb on - strand at 242.961 kb on + strand at 242.962 kb on - strand at 243.005 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 239,595 + EX28DRAFT_2928 0.77 -0.1 239,595 + EX28DRAFT_2928 0.77 +0.5 239,605 + EX28DRAFT_2928 0.78 +0.9 239,605 + EX28DRAFT_2928 0.78 -0.7 239,605 + EX28DRAFT_2928 0.78 +6.5 239,606 - EX28DRAFT_2928 0.78 -3.1 239,606 - EX28DRAFT_2928 0.78 +0.5 239,669 + EX28DRAFT_2928 0.89 -0.2 239,711 + -0.1 239,717 + -0.2 239,717 + -3.2 239,718 - +0.8 239,784 - -0.5 239,784 - -1.3 239,797 - EX28DRAFT_2929 0.12 +0.1 239,965 + EX28DRAFT_2929 0.74 -1.3 239,966 - EX28DRAFT_2929 0.74 -2.5 239,966 - EX28DRAFT_2929 0.74 +0.6 240,006 - EX28DRAFT_2929 0.89 +0.8 240,060 + -0.1 240,099 - EX28DRAFT_2930 0.23 +0.8 240,154 + EX28DRAFT_2930 0.46 -0.3 240,154 + EX28DRAFT_2930 0.46 -2.0 240,154 + EX28DRAFT_2930 0.46 -1.0 240,184 + EX28DRAFT_2930 0.59 -0.4 240,216 + EX28DRAFT_2930 0.73 -0.9 240,263 + -0.3 240,264 - +0.7 240,291 + +0.3 240,295 + +2.2 240,296 - -3.0 240,296 - +0.4 240,298 + +0.9 240,298 + -0.8 240,298 + -1.7 240,340 + -0.5 240,340 + -1.5 240,340 + +0.8 240,341 - +0.9 240,438 - +1.1 240,491 + +1.4 240,518 + -0.4 240,519 - -0.3 240,521 + +2.7 240,521 + +0.1 240,522 - -2.1 240,522 - +1.3 240,654 + EX28DRAFT_2931 0.12 -1.6 240,654 + EX28DRAFT_2931 0.12 +10.4 240,655 - EX28DRAFT_2931 0.12 -1.0 240,710 - EX28DRAFT_2931 0.16 -0.1 240,772 - EX28DRAFT_2931 0.19 -0.4 240,809 + EX28DRAFT_2931 0.22 -1.5 240,934 + EX28DRAFT_2931 0.29 +0.0 240,934 + EX28DRAFT_2931 0.29 -0.4 240,934 + EX28DRAFT_2931 0.29 +1.7 240,935 - EX28DRAFT_2931 0.29 +0.9 240,935 - EX28DRAFT_2931 0.29 -0.2 240,935 - EX28DRAFT_2931 0.29 -0.1 240,935 - EX28DRAFT_2931 0.29 +0.5 240,936 + EX28DRAFT_2931 0.29 +0.7 240,936 + EX28DRAFT_2931 0.29 +0.3 240,936 + EX28DRAFT_2931 0.29 +0.3 240,937 - EX28DRAFT_2931 0.29 -0.6 240,937 - EX28DRAFT_2931 0.29 +2.3 240,937 - EX28DRAFT_2931 0.29 -1.3 241,026 + EX28DRAFT_2931 0.35 -0.3 241,107 - EX28DRAFT_2931 0.40 +2.0 241,107 - EX28DRAFT_2931 0.40 -1.3 241,117 + EX28DRAFT_2931 0.40 -0.3 241,118 - EX28DRAFT_2931 0.41 -1.2 241,118 - EX28DRAFT_2931 0.41 -3.0 241,118 - EX28DRAFT_2931 0.41 -0.9 241,118 - EX28DRAFT_2931 0.41 +1.5 241,127 + EX28DRAFT_2931 0.41 +0.0 241,160 + EX28DRAFT_2931 0.43 +3.8 241,160 + EX28DRAFT_2931 0.43 +0.3 241,388 - EX28DRAFT_2931 0.57 -0.5 241,451 - EX28DRAFT_2931 0.61 -0.4 241,470 + EX28DRAFT_2931 0.62 -0.3 241,471 - EX28DRAFT_2931 0.62 +0.3 241,531 + EX28DRAFT_2931 0.66 -0.3 241,532 - EX28DRAFT_2931 0.66 +0.1 241,549 + EX28DRAFT_2931 0.67 +0.1 241,549 + EX28DRAFT_2931 0.67 +0.1 241,549 + EX28DRAFT_2931 0.67 -0.2 241,646 - EX28DRAFT_2931 0.73 -0.1 241,646 - EX28DRAFT_2931 0.73 +1.8 241,752 + EX28DRAFT_2931 0.79 +0.3 241,817 - EX28DRAFT_2931 0.83 +0.5 241,830 + EX28DRAFT_2931 0.84 -1.2 241,841 + EX28DRAFT_2931 0.85 -1.0 241,842 - EX28DRAFT_2931 0.85 -0.5 241,842 - EX28DRAFT_2931 0.85 +1.5 241,988 - -3.1 241,988 - -1.1 242,058 + -0.1 242,059 - -0.1 242,069 + +0.5 242,069 + +0.7 242,089 + -0.6 242,126 + -0.5 242,168 - EX28DRAFT_2932 0.10 +2.2 242,170 - EX28DRAFT_2932 0.11 -1.1 242,275 + EX28DRAFT_2932 0.26 +0.3 242,276 - EX28DRAFT_2932 0.26 -0.6 242,330 - EX28DRAFT_2932 0.33 -2.9 242,411 - EX28DRAFT_2932 0.45 -3.2 242,411 - EX28DRAFT_2932 0.45 -0.4 242,419 - EX28DRAFT_2932 0.46 +0.5 242,693 - EX28DRAFT_2932 0.85 +0.6 242,701 + EX28DRAFT_2932 0.86 -0.2 242,740 + -1.2 242,740 + +1.8 242,768 + -0.2 242,769 - -3.5 242,809 + -0.2 242,810 - +1.1 242,840 + -0.2 242,841 - +1.5 242,841 - -3.6 242,920 - +0.0 242,920 - -0.3 242,961 + +3.3 242,962 - -0.9 243,005 + +1.6
Or see this region's nucleotide sequence