Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2850 and EX28DRAFT_2851 are separated by 71 nucleotides EX28DRAFT_2851 and EX28DRAFT_2852 are separated by 15 nucleotides EX28DRAFT_2852 and EX28DRAFT_2853 overlap by 1 nucleotides
EX28DRAFT_2850: EX28DRAFT_2850 - Predicted aminopeptidases, at 151,093 to 152,136
_2850
EX28DRAFT_2851: EX28DRAFT_2851 - phosphoadenosine phosphosulfate reductase, thioredoxin dependent, at 152,208 to 152,942
_2851
EX28DRAFT_2852: EX28DRAFT_2852 - sulfite reductase (NADPH) hemoprotein, beta-component, at 152,958 to 154,670
_2852
EX28DRAFT_2853: EX28DRAFT_2853 - sulfite reductase [NADPH] flavoprotein, alpha-component, at 154,670 to 156,475
_2853
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 152.143 kb on + strand at 152.144 kb on - strand at 152.163 kb on - strand at 152.163 kb on - strand at 152.365 kb on + strand, within EX28DRAFT_2851 at 152.632 kb on + strand, within EX28DRAFT_2851 at 152.676 kb on - strand, within EX28DRAFT_2851 at 152.778 kb on - strand, within EX28DRAFT_2851 at 152.800 kb on + strand, within EX28DRAFT_2851 at 152.942 kb on + strand at 152.942 kb on + strand at 152.942 kb on + strand at 152.942 kb on + strand at 152.943 kb on - strand at 152.943 kb on - strand at 152.943 kb on - strand at 152.943 kb on - strand at 152.946 kb on + strand at 152.947 kb on - strand at 152.947 kb on - strand at 152.947 kb on - strand at 152.947 kb on - strand at 153.018 kb on - strand at 153.123 kb on - strand at 153.123 kb on - strand at 153.143 kb on + strand, within EX28DRAFT_2852 at 153.252 kb on - strand, within EX28DRAFT_2852 at 153.252 kb on - strand, within EX28DRAFT_2852 at 153.257 kb on + strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.513 kb on - strand, within EX28DRAFT_2852 at 153.572 kb on + strand, within EX28DRAFT_2852 at 153.745 kb on + strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.872 kb on - strand, within EX28DRAFT_2852 at 153.923 kb on + strand, within EX28DRAFT_2852 at 154.039 kb on + strand, within EX28DRAFT_2852 at 154.040 kb on - strand, within EX28DRAFT_2852 at 154.159 kb on + strand, within EX28DRAFT_2852 at 154.345 kb on + strand, within EX28DRAFT_2852 at 154.499 kb on - strand at 154.499 kb on - strand at 154.499 kb on - strand at 154.503 kb on - strand at 154.632 kb on - strand at 154.821 kb on + strand at 154.821 kb on + strand at 154.822 kb on - strand at 154.822 kb on - strand at 154.822 kb on - strand at 154.822 kb on - strand at 154.822 kb on - strand at 154.886 kb on + strand, within EX28DRAFT_2853 at 154.886 kb on + strand, within EX28DRAFT_2853 at 154.887 kb on - strand, within EX28DRAFT_2853 at 154.887 kb on - strand, within EX28DRAFT_2853 at 154.887 kb on - strand, within EX28DRAFT_2853 at 154.890 kb on + strand, within EX28DRAFT_2853 at 154.890 kb on + strand, within EX28DRAFT_2853 at 154.941 kb on - strand, within EX28DRAFT_2853 at 154.956 kb on + strand, within EX28DRAFT_2853 at 154.957 kb on - strand, within EX28DRAFT_2853 at 155.059 kb on + strand, within EX28DRAFT_2853 at 155.060 kb on - strand, within EX28DRAFT_2853
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 152,143 + +1.4 152,144 - -0.8 152,163 - +0.2 152,163 - -0.7 152,365 + EX28DRAFT_2851 0.21 -0.9 152,632 + EX28DRAFT_2851 0.58 -0.1 152,676 - EX28DRAFT_2851 0.64 -3.9 152,778 - EX28DRAFT_2851 0.78 -0.1 152,800 + EX28DRAFT_2851 0.81 -3.6 152,942 + -2.3 152,942 + -1.8 152,942 + -2.5 152,942 + -2.1 152,943 - -0.3 152,943 - +1.7 152,943 - -2.2 152,943 - -1.5 152,946 + -3.1 152,947 - -1.6 152,947 - -0.2 152,947 - -1.8 152,947 - -1.4 153,018 - -1.9 153,123 - +0.4 153,123 - -0.6 153,143 + EX28DRAFT_2852 0.11 -1.9 153,252 - EX28DRAFT_2852 0.17 -2.1 153,252 - EX28DRAFT_2852 0.17 -1.9 153,257 + EX28DRAFT_2852 0.17 -4.1 153,258 - EX28DRAFT_2852 0.18 +0.3 153,258 - EX28DRAFT_2852 0.18 -3.0 153,258 - EX28DRAFT_2852 0.18 -1.0 153,258 - EX28DRAFT_2852 0.18 -0.5 153,258 - EX28DRAFT_2852 0.18 -2.1 153,513 - EX28DRAFT_2852 0.32 -2.9 153,572 + EX28DRAFT_2852 0.36 +4.8 153,745 + EX28DRAFT_2852 0.46 +0.3 153,746 - EX28DRAFT_2852 0.46 -2.1 153,746 - EX28DRAFT_2852 0.46 -0.5 153,746 - EX28DRAFT_2852 0.46 -2.1 153,746 - EX28DRAFT_2852 0.46 -1.1 153,746 - EX28DRAFT_2852 0.46 -0.4 153,872 - EX28DRAFT_2852 0.53 -3.0 153,923 + EX28DRAFT_2852 0.56 +1.5 154,039 + EX28DRAFT_2852 0.63 -2.6 154,040 - EX28DRAFT_2852 0.63 -1.7 154,159 + EX28DRAFT_2852 0.70 -1.4 154,345 + EX28DRAFT_2852 0.81 -3.5 154,499 - -3.0 154,499 - -1.1 154,499 - -0.3 154,503 - -0.1 154,632 - +0.6 154,821 + +0.3 154,821 + -2.8 154,822 - -2.1 154,822 - -2.0 154,822 - -0.7 154,822 - -1.7 154,822 - -0.6 154,886 + EX28DRAFT_2853 0.12 +0.7 154,886 + EX28DRAFT_2853 0.12 -2.5 154,887 - EX28DRAFT_2853 0.12 -1.0 154,887 - EX28DRAFT_2853 0.12 -1.0 154,887 - EX28DRAFT_2853 0.12 +1.6 154,890 + EX28DRAFT_2853 0.12 -3.0 154,890 + EX28DRAFT_2853 0.12 -5.3 154,941 - EX28DRAFT_2853 0.15 -2.4 154,956 + EX28DRAFT_2853 0.16 -1.4 154,957 - EX28DRAFT_2853 0.16 -1.2 155,059 + EX28DRAFT_2853 0.22 -2.8 155,060 - EX28DRAFT_2853 0.22 -1.1
Or see this region's nucleotide sequence