Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2843 and EX28DRAFT_2844 are separated by 19 nucleotides EX28DRAFT_2844 and EX28DRAFT_2845 are separated by 166 nucleotides EX28DRAFT_2845 and EX28DRAFT_2846 are separated by 58 nucleotides EX28DRAFT_2846 and EX28DRAFT_2847 overlap by 1 nucleotides
EX28DRAFT_2843: EX28DRAFT_2843 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 144,947 to 145,657
_2843
EX28DRAFT_2844: EX28DRAFT_2844 - Septum formation initiator, at 145,677 to 145,988
_2844
EX28DRAFT_2845: EX28DRAFT_2845 - Protein of unknown function (DUF3561), at 146,155 to 146,481
_2845
EX28DRAFT_2846: EX28DRAFT_2846 - adenylyl-sulfate kinase, at 146,540 to 147,145
_2846
EX28DRAFT_2847: EX28DRAFT_2847 - sulfate adenylyltransferase, large subunit, at 147,145 to 148,569
_2847
Position (kb) 146
147
148 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 145.635 kb on - strand at 146.039 kb on - strand at 146.120 kb on + strand at 146.120 kb on + strand at 146.145 kb on - strand at 146.156 kb on + strand at 146.226 kb on - strand, within EX28DRAFT_2845 at 146.312 kb on + strand, within EX28DRAFT_2845 at 146.313 kb on - strand, within EX28DRAFT_2845 at 146.462 kb on + strand at 146.462 kb on + strand at 146.463 kb on - strand at 146.463 kb on - strand at 146.481 kb on + strand at 146.482 kb on - strand at 146.485 kb on + strand at 146.485 kb on + strand at 146.485 kb on + strand at 146.486 kb on - strand at 146.486 kb on - strand at 146.580 kb on - strand at 146.580 kb on - strand at 146.588 kb on + strand at 146.649 kb on + strand, within EX28DRAFT_2846 at 146.650 kb on - strand, within EX28DRAFT_2846 at 146.650 kb on - strand, within EX28DRAFT_2846 at 146.704 kb on - strand, within EX28DRAFT_2846 at 146.704 kb on - strand, within EX28DRAFT_2846 at 146.825 kb on - strand, within EX28DRAFT_2846 at 146.967 kb on + strand, within EX28DRAFT_2846 at 146.968 kb on - strand, within EX28DRAFT_2846 at 146.975 kb on + strand, within EX28DRAFT_2846 at 147.147 kb on - strand at 147.274 kb on - strand at 147.315 kb on + strand, within EX28DRAFT_2847 at 147.316 kb on - strand, within EX28DRAFT_2847 at 147.506 kb on + strand, within EX28DRAFT_2847 at 147.506 kb on + strand, within EX28DRAFT_2847 at 147.506 kb on + strand, within EX28DRAFT_2847 at 147.506 kb on + strand, within EX28DRAFT_2847 at 147.506 kb on + strand, within EX28DRAFT_2847 at 147.506 kb on + strand, within EX28DRAFT_2847 at 147.507 kb on - strand, within EX28DRAFT_2847 at 147.507 kb on - strand, within EX28DRAFT_2847 at 147.619 kb on - strand, within EX28DRAFT_2847 at 147.619 kb on - strand, within EX28DRAFT_2847 at 147.748 kb on + strand, within EX28DRAFT_2847 at 147.749 kb on - strand, within EX28DRAFT_2847 at 147.815 kb on + strand, within EX28DRAFT_2847 at 147.816 kb on - strand, within EX28DRAFT_2847 at 147.902 kb on + strand, within EX28DRAFT_2847 at 147.902 kb on + strand, within EX28DRAFT_2847 at 147.902 kb on + strand, within EX28DRAFT_2847 at 147.961 kb on + strand, within EX28DRAFT_2847 at 147.962 kb on - strand, within EX28DRAFT_2847 at 147.972 kb on + strand, within EX28DRAFT_2847 at 148.035 kb on + strand, within EX28DRAFT_2847 at 148.111 kb on - strand, within EX28DRAFT_2847 at 148.111 kb on - strand, within EX28DRAFT_2847
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 145,635 - +0.3 146,039 - -1.2 146,120 + -0.8 146,120 + -1.0 146,145 - +1.5 146,156 + -0.1 146,226 - EX28DRAFT_2845 0.22 -0.6 146,312 + EX28DRAFT_2845 0.48 -1.9 146,313 - EX28DRAFT_2845 0.48 -1.2 146,462 + +0.0 146,462 + +0.2 146,463 - +0.6 146,463 - +0.2 146,481 + +0.3 146,482 - -0.2 146,485 + -0.5 146,485 + -0.2 146,485 + -0.4 146,486 - -1.0 146,486 - -2.6 146,580 - -0.6 146,580 - -0.4 146,588 + -2.2 146,649 + EX28DRAFT_2846 0.18 -1.4 146,650 - EX28DRAFT_2846 0.18 -2.2 146,650 - EX28DRAFT_2846 0.18 -2.3 146,704 - EX28DRAFT_2846 0.27 +1.8 146,704 - EX28DRAFT_2846 0.27 -2.0 146,825 - EX28DRAFT_2846 0.47 -3.0 146,967 + EX28DRAFT_2846 0.70 -5.8 146,968 - EX28DRAFT_2846 0.71 -1.6 146,975 + EX28DRAFT_2846 0.72 -4.6 147,147 - -1.1 147,274 - +0.7 147,315 + EX28DRAFT_2847 0.12 -0.1 147,316 - EX28DRAFT_2847 0.12 -2.7 147,506 + EX28DRAFT_2847 0.25 -1.3 147,506 + EX28DRAFT_2847 0.25 -2.0 147,506 + EX28DRAFT_2847 0.25 -0.5 147,506 + EX28DRAFT_2847 0.25 +0.3 147,506 + EX28DRAFT_2847 0.25 +0.5 147,506 + EX28DRAFT_2847 0.25 -2.3 147,507 - EX28DRAFT_2847 0.25 +0.6 147,507 - EX28DRAFT_2847 0.25 +0.6 147,619 - EX28DRAFT_2847 0.33 -0.8 147,619 - EX28DRAFT_2847 0.33 +0.9 147,748 + EX28DRAFT_2847 0.42 -1.6 147,749 - EX28DRAFT_2847 0.42 -3.1 147,815 + EX28DRAFT_2847 0.47 -2.5 147,816 - EX28DRAFT_2847 0.47 +0.1 147,902 + EX28DRAFT_2847 0.53 -1.5 147,902 + EX28DRAFT_2847 0.53 -0.7 147,902 + EX28DRAFT_2847 0.53 -1.7 147,961 + EX28DRAFT_2847 0.57 +0.3 147,962 - EX28DRAFT_2847 0.57 -1.9 147,972 + EX28DRAFT_2847 0.58 -1.0 148,035 + EX28DRAFT_2847 0.62 -2.0 148,111 - EX28DRAFT_2847 0.68 -0.0 148,111 - EX28DRAFT_2847 0.68 -0.5
Or see this region's nucleotide sequence