Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2785 and EX28DRAFT_2786 are separated by 89 nucleotides EX28DRAFT_2786 and EX28DRAFT_2787 are separated by 129 nucleotides EX28DRAFT_2787 and EX28DRAFT_2788 are separated by 35 nucleotides EX28DRAFT_2788 and EX28DRAFT_2789 overlap by 4 nucleotides
EX28DRAFT_2785: EX28DRAFT_2785 - protein RecA, at 89,250 to 90,308
_2785
EX28DRAFT_2786: EX28DRAFT_2786 - amidohydrolase, PncC family, at 90,398 to 90,895
_2786
EX28DRAFT_2787: EX28DRAFT_2787 - ABC-type metal ion transport system, periplasmic component/surface adhesin, at 91,025 to 91,882
_2787
EX28DRAFT_2788: EX28DRAFT_2788 - ABC-type Mn2+/Zn2+ transport systems, permease components, at 91,918 to 92,778
_2788
EX28DRAFT_2789: EX28DRAFT_2789 - ABC-type Mn/Zn transport systems, ATPase component, at 92,775 to 93,428
_2789
Position (kb) 91
92 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 90.397 kb on - strand at 90.635 kb on - strand, within EX28DRAFT_2786 at 90.729 kb on + strand, within EX28DRAFT_2786 at 90.730 kb on - strand, within EX28DRAFT_2786 at 91.077 kb on + strand at 91.077 kb on + strand at 91.355 kb on - strand, within EX28DRAFT_2787 at 91.426 kb on - strand, within EX28DRAFT_2787 at 91.426 kb on - strand, within EX28DRAFT_2787 at 91.895 kb on - strand at 91.977 kb on + strand at 91.978 kb on - strand at 91.978 kb on - strand at 92.104 kb on + strand, within EX28DRAFT_2788 at 92.334 kb on + strand, within EX28DRAFT_2788 at 92.335 kb on - strand, within EX28DRAFT_2788 at 92.335 kb on - strand, within EX28DRAFT_2788 at 92.335 kb on - strand, within EX28DRAFT_2788 at 92.335 kb on - strand, within EX28DRAFT_2788 at 92.335 kb on - strand, within EX28DRAFT_2788 at 92.465 kb on + strand, within EX28DRAFT_2788 at 92.539 kb on - strand, within EX28DRAFT_2788 at 92.583 kb on + strand, within EX28DRAFT_2788 at 92.598 kb on - strand, within EX28DRAFT_2788 at 92.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 90,397 - -0.5 90,635 - EX28DRAFT_2786 0.48 -2.8 90,729 + EX28DRAFT_2786 0.66 -0.5 90,730 - EX28DRAFT_2786 0.67 +0.0 91,077 + +0.7 91,077 + -2.4 91,355 - EX28DRAFT_2787 0.38 -2.6 91,426 - EX28DRAFT_2787 0.47 -1.2 91,426 - EX28DRAFT_2787 0.47 -1.2 91,895 - -0.7 91,977 + +0.8 91,978 - +1.0 91,978 - +0.3 92,104 + EX28DRAFT_2788 0.22 -0.3 92,334 + EX28DRAFT_2788 0.48 +0.7 92,335 - EX28DRAFT_2788 0.48 +0.0 92,335 - EX28DRAFT_2788 0.48 -0.3 92,335 - EX28DRAFT_2788 0.48 -0.3 92,335 - EX28DRAFT_2788 0.48 +2.3 92,335 - EX28DRAFT_2788 0.48 -0.8 92,465 + EX28DRAFT_2788 0.64 -4.4 92,539 - EX28DRAFT_2788 0.72 +2.7 92,583 + EX28DRAFT_2788 0.77 +0.7 92,598 - EX28DRAFT_2788 0.79 +0.3 92,734 - +0.4
Or see this region's nucleotide sequence