Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2700

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2699 and EX28DRAFT_2700 overlap by 4 nucleotidesEX28DRAFT_2700 and EX28DRAFT_2701 are separated by 60 nucleotides EX28DRAFT_2699: EX28DRAFT_2699 - chorismate mutase (EC 5.4.99.5), at 6,661 to 7,821 _2699 EX28DRAFT_2700: EX28DRAFT_2700 - Gluconolactonase, at 7,818 to 8,690 _2700 EX28DRAFT_2701: EX28DRAFT_2701 - chorismate mutase (EC 5.4.99.5), at 8,751 to 9,872 _2701 Position (kb) 7 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6.874 kb on + strand, within EX28DRAFT_2699at 6.875 kb on - strand, within EX28DRAFT_2699at 6.952 kb on - strand, within EX28DRAFT_2699at 7.004 kb on - strand, within EX28DRAFT_2699at 7.027 kb on + strand, within EX28DRAFT_2699at 7.028 kb on - strand, within EX28DRAFT_2699at 7.053 kb on + strand, within EX28DRAFT_2699at 7.168 kb on + strand, within EX28DRAFT_2699at 7.169 kb on - strand, within EX28DRAFT_2699at 7.441 kb on + strand, within EX28DRAFT_2699at 7.455 kb on - strand, within EX28DRAFT_2699at 7.687 kb on + strand, within EX28DRAFT_2699at 7.687 kb on + strand, within EX28DRAFT_2699at 7.688 kb on - strand, within EX28DRAFT_2699at 7.688 kb on - strand, within EX28DRAFT_2699at 7.820 kb on - strandat 7.894 kb on + strandat 7.919 kb on + strand, within EX28DRAFT_2700at 7.940 kb on + strand, within EX28DRAFT_2700at 7.941 kb on - strand, within EX28DRAFT_2700at 8.327 kb on - strand, within EX28DRAFT_2700at 8.391 kb on - strand, within EX28DRAFT_2700at 8.475 kb on - strand, within EX28DRAFT_2700at 8.608 kb on + strandat 8.663 kb on - strandat 8.663 kb on - strandat 8.736 kb on - strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.740 kb on - strandat 8.740 kb on - strandat 8.740 kb on - strandat 8.740 kb on - strandat 8.911 kb on + strand, within EX28DRAFT_2701at 8.912 kb on - strand, within EX28DRAFT_2701at 8.951 kb on + strand, within EX28DRAFT_2701at 8.952 kb on - strand, within EX28DRAFT_2701at 8.952 kb on - strand, within EX28DRAFT_2701at 8.952 kb on - strand, within EX28DRAFT_2701at 8.955 kb on - strand, within EX28DRAFT_2701at 8.966 kb on - strand, within EX28DRAFT_2701at 9.020 kb on - strand, within EX28DRAFT_2701at 9.020 kb on - strand, within EX28DRAFT_2701at 9.020 kb on - strand, within EX28DRAFT_2701at 9.023 kb on + strand, within EX28DRAFT_2701at 9.625 kb on + strand, within EX28DRAFT_2701

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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6,874 + EX28DRAFT_2699 0.18 -0.9
6,875 - EX28DRAFT_2699 0.18 -0.7
6,952 - EX28DRAFT_2699 0.25 -1.9
7,004 - EX28DRAFT_2699 0.30 +0.9
7,027 + EX28DRAFT_2699 0.32 -0.6
7,028 - EX28DRAFT_2699 0.32 -2.3
7,053 + EX28DRAFT_2699 0.34 +0.4
7,168 + EX28DRAFT_2699 0.44 -0.1
7,169 - EX28DRAFT_2699 0.44 -0.1
7,441 + EX28DRAFT_2699 0.67 -0.9
7,455 - EX28DRAFT_2699 0.68 -3.0
7,687 + EX28DRAFT_2699 0.88 +0.7
7,687 + EX28DRAFT_2699 0.88 +0.3
7,688 - EX28DRAFT_2699 0.88 -0.1
7,688 - EX28DRAFT_2699 0.88 -0.4
7,820 - +0.7
7,894 + -0.8
7,919 + EX28DRAFT_2700 0.12 -0.3
7,940 + EX28DRAFT_2700 0.14 +1.1
7,941 - EX28DRAFT_2700 0.14 -1.1
8,327 - EX28DRAFT_2700 0.58 -0.5
8,391 - EX28DRAFT_2700 0.66 -0.7
8,475 - EX28DRAFT_2700 0.75 -0.8
8,608 + +0.0
8,663 - +0.2
8,663 - +0.7
8,736 - -1.3
8,739 + -1.3
8,739 + -1.1
8,739 + +0.3
8,739 + +0.3
8,739 + -0.2
8,740 - +1.3
8,740 - -2.9
8,740 - +1.3
8,740 - -4.0
8,911 + EX28DRAFT_2701 0.14 -2.4
8,912 - EX28DRAFT_2701 0.14 -0.7
8,951 + EX28DRAFT_2701 0.18 -2.7
8,952 - EX28DRAFT_2701 0.18 -1.3
8,952 - EX28DRAFT_2701 0.18 -1.6
8,952 - EX28DRAFT_2701 0.18 -2.3
8,955 - EX28DRAFT_2701 0.18 -0.2
8,966 - EX28DRAFT_2701 0.19 -2.0
9,020 - EX28DRAFT_2701 0.24 -1.8
9,020 - EX28DRAFT_2701 0.24 -1.6
9,020 - EX28DRAFT_2701 0.24 -2.7
9,023 + EX28DRAFT_2701 0.24 -3.6
9,625 + EX28DRAFT_2701 0.78 -1.0

Or see this region's nucleotide sequence