Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1944 and EX28DRAFT_1945 are separated by 15 nucleotides EX28DRAFT_1945 and EX28DRAFT_1946 overlap by 1 nucleotides EX28DRAFT_1946 and EX28DRAFT_1947 are separated by 144 nucleotides
EX28DRAFT_1944: EX28DRAFT_1944 - putative urate catabolism protein, at 1,949,395 to 1,950,327
_1944
EX28DRAFT_1945: EX28DRAFT_1945 - Hydantoin racemase, at 1,950,343 to 1,951,086
_1945
EX28DRAFT_1946: EX28DRAFT_1946 - Transcriptional regulators, at 1,951,086 to 1,951,802
_1946
EX28DRAFT_1947: EX28DRAFT_1947 - Cytosine/uracil/thiamine/allantoin permeases, at 1,951,947 to 1,953,443
_1947
Position (kb) 1950
1951
1952 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1949.396 kb on + strand at 1949.396 kb on + strand at 1949.397 kb on - strand at 1949.397 kb on - strand at 1949.478 kb on + strand at 1949.479 kb on - strand at 1949.479 kb on - strand at 1949.479 kb on - strand at 1949.480 kb on + strand at 1949.609 kb on + strand, within EX28DRAFT_1944 at 1949.610 kb on - strand, within EX28DRAFT_1944 at 1949.613 kb on + strand, within EX28DRAFT_1944 at 1949.613 kb on + strand, within EX28DRAFT_1944 at 1949.613 kb on + strand, within EX28DRAFT_1944 at 1949.614 kb on - strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.616 kb on - strand, within EX28DRAFT_1944 at 1949.616 kb on - strand, within EX28DRAFT_1944 at 1949.616 kb on - strand, within EX28DRAFT_1944 at 1949.759 kb on + strand, within EX28DRAFT_1944 at 1949.832 kb on - strand, within EX28DRAFT_1944 at 1949.925 kb on - strand, within EX28DRAFT_1944 at 1950.215 kb on + strand, within EX28DRAFT_1944 at 1950.215 kb on + strand, within EX28DRAFT_1944 at 1950.377 kb on - strand at 1950.582 kb on + strand, within EX28DRAFT_1945 at 1950.582 kb on + strand, within EX28DRAFT_1945 at 1950.583 kb on - strand, within EX28DRAFT_1945 at 1950.686 kb on + strand, within EX28DRAFT_1945 at 1951.069 kb on + strand at 1951.070 kb on - strand at 1951.070 kb on - strand at 1951.071 kb on + strand at 1951.072 kb on - strand at 1951.170 kb on - strand, within EX28DRAFT_1946 at 1951.414 kb on + strand, within EX28DRAFT_1946 at 1951.791 kb on + strand at 1951.792 kb on - strand at 1951.792 kb on - strand at 1951.792 kb on - strand at 1951.907 kb on - strand at 1952.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,949,396 + +3.8 1,949,396 + +1.6 1,949,397 - -1.3 1,949,397 - -2.6 1,949,478 + +0.3 1,949,479 - -0.6 1,949,479 - +0.1 1,949,479 - -0.5 1,949,480 + +0.6 1,949,609 + EX28DRAFT_1944 0.23 -1.9 1,949,610 - EX28DRAFT_1944 0.23 +2.0 1,949,613 + EX28DRAFT_1944 0.23 +1.3 1,949,613 + EX28DRAFT_1944 0.23 -1.0 1,949,613 + EX28DRAFT_1944 0.23 -0.5 1,949,614 - EX28DRAFT_1944 0.23 +0.6 1,949,615 + EX28DRAFT_1944 0.24 -1.0 1,949,615 + EX28DRAFT_1944 0.24 +0.2 1,949,615 + EX28DRAFT_1944 0.24 -4.0 1,949,615 + EX28DRAFT_1944 0.24 +1.1 1,949,616 - EX28DRAFT_1944 0.24 -0.6 1,949,616 - EX28DRAFT_1944 0.24 -1.9 1,949,616 - EX28DRAFT_1944 0.24 +0.3 1,949,759 + EX28DRAFT_1944 0.39 +1.0 1,949,832 - EX28DRAFT_1944 0.47 +0.5 1,949,925 - EX28DRAFT_1944 0.57 +1.9 1,950,215 + EX28DRAFT_1944 0.88 +2.5 1,950,215 + EX28DRAFT_1944 0.88 -0.2 1,950,377 - +0.7 1,950,582 + EX28DRAFT_1945 0.32 -0.6 1,950,582 + EX28DRAFT_1945 0.32 -1.4 1,950,583 - EX28DRAFT_1945 0.32 +0.8 1,950,686 + EX28DRAFT_1945 0.46 -3.1 1,951,069 + -1.1 1,951,070 - +0.9 1,951,070 - -1.1 1,951,071 + +1.0 1,951,072 - +1.2 1,951,170 - EX28DRAFT_1946 0.12 +1.7 1,951,414 + EX28DRAFT_1946 0.46 +0.7 1,951,791 + +0.3 1,951,792 - +0.3 1,951,792 - +0.2 1,951,792 - +0.3 1,951,907 - -0.7 1,952,062 - +0.0
Or see this region's nucleotide sequence