Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1712

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1711 and EX28DRAFT_1712 are separated by 10 nucleotidesEX28DRAFT_1712 and EX28DRAFT_1713 are separated by 40 nucleotides EX28DRAFT_1711: EX28DRAFT_1711 - H+/gluconate symporter and related permeases, at 1,727,251 to 1,728,642 _1711 EX28DRAFT_1712: EX28DRAFT_1712 - 3-hydroxybutyrate dehydrogenase, at 1,728,653 to 1,729,423 _1712 EX28DRAFT_1713: EX28DRAFT_1713 - Uncharacterized conserved protein, at 1,729,464 to 1,730,906 _1713 Position (kb) 1728 1729 1730Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1727.745 kb on + strand, within EX28DRAFT_1711at 1727.746 kb on - strand, within EX28DRAFT_1711at 1727.746 kb on - strand, within EX28DRAFT_1711at 1727.817 kb on + strand, within EX28DRAFT_1711at 1727.818 kb on - strand, within EX28DRAFT_1711at 1727.818 kb on - strand, within EX28DRAFT_1711at 1727.859 kb on + strand, within EX28DRAFT_1711at 1727.979 kb on - strand, within EX28DRAFT_1711at 1728.381 kb on + strand, within EX28DRAFT_1711at 1728.382 kb on - strand, within EX28DRAFT_1711at 1728.436 kb on - strand, within EX28DRAFT_1711at 1728.489 kb on + strand, within EX28DRAFT_1711at 1728.585 kb on + strandat 1728.724 kb on - strandat 1728.921 kb on + strand, within EX28DRAFT_1712at 1729.128 kb on + strand, within EX28DRAFT_1712at 1729.129 kb on - strand, within EX28DRAFT_1712at 1729.519 kb on + strandat 1729.519 kb on + strandat 1729.520 kb on - strandat 1729.572 kb on + strandat 1729.582 kb on + strandat 1729.715 kb on - strand, within EX28DRAFT_1713at 1729.781 kb on + strand, within EX28DRAFT_1713at 1729.782 kb on - strand, within EX28DRAFT_1713at 1729.782 kb on - strand, within EX28DRAFT_1713at 1729.820 kb on + strand, within EX28DRAFT_1713at 1729.821 kb on - strand, within EX28DRAFT_1713at 1729.928 kb on - strand, within EX28DRAFT_1713at 1729.941 kb on + strand, within EX28DRAFT_1713at 1729.942 kb on - strand, within EX28DRAFT_1713at 1729.942 kb on - strand, within EX28DRAFT_1713at 1729.942 kb on - strand, within EX28DRAFT_1713at 1729.942 kb on - strand, within EX28DRAFT_1713at 1729.942 kb on - strand, within EX28DRAFT_1713at 1729.951 kb on + strand, within EX28DRAFT_1713at 1729.951 kb on + strand, within EX28DRAFT_1713at 1729.980 kb on + strand, within EX28DRAFT_1713at 1729.980 kb on + strand, within EX28DRAFT_1713at 1729.980 kb on + strand, within EX28DRAFT_1713at 1729.981 kb on - strand, within EX28DRAFT_1713at 1729.981 kb on - strand, within EX28DRAFT_1713at 1729.981 kb on - strand, within EX28DRAFT_1713at 1730.059 kb on + strand, within EX28DRAFT_1713at 1730.090 kb on + strand, within EX28DRAFT_1713at 1730.090 kb on + strand, within EX28DRAFT_1713at 1730.090 kb on + strand, within EX28DRAFT_1713at 1730.092 kb on + strand, within EX28DRAFT_1713at 1730.093 kb on - strand, within EX28DRAFT_1713at 1730.093 kb on - strand, within EX28DRAFT_1713at 1730.257 kb on + strand, within EX28DRAFT_1713at 1730.257 kb on + strand, within EX28DRAFT_1713at 1730.257 kb on + strand, within EX28DRAFT_1713at 1730.261 kb on + strand, within EX28DRAFT_1713at 1730.390 kb on + strand, within EX28DRAFT_1713at 1730.390 kb on + strand, within EX28DRAFT_1713at 1730.390 kb on + strand, within EX28DRAFT_1713

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,727,745 + EX28DRAFT_1711 0.35 -0.5
1,727,746 - EX28DRAFT_1711 0.36 +0.8
1,727,746 - EX28DRAFT_1711 0.36 +0.7
1,727,817 + EX28DRAFT_1711 0.41 -2.1
1,727,818 - EX28DRAFT_1711 0.41 +0.7
1,727,818 - EX28DRAFT_1711 0.41 -0.9
1,727,859 + EX28DRAFT_1711 0.44 -1.9
1,727,979 - EX28DRAFT_1711 0.52 +4.5
1,728,381 + EX28DRAFT_1711 0.81 -0.5
1,728,382 - EX28DRAFT_1711 0.81 -2.6
1,728,436 - EX28DRAFT_1711 0.85 -0.2
1,728,489 + EX28DRAFT_1711 0.89 -0.2
1,728,585 + +0.3
1,728,724 - -3.1
1,728,921 + EX28DRAFT_1712 0.35 -1.0
1,729,128 + EX28DRAFT_1712 0.62 +0.3
1,729,129 - EX28DRAFT_1712 0.62 +0.8
1,729,519 + +3.3
1,729,519 + +0.4
1,729,520 - -3.1
1,729,572 + +0.8
1,729,582 + +0.7
1,729,715 - EX28DRAFT_1713 0.17 +0.3
1,729,781 + EX28DRAFT_1713 0.22 +0.3
1,729,782 - EX28DRAFT_1713 0.22 +0.8
1,729,782 - EX28DRAFT_1713 0.22 +0.1
1,729,820 + EX28DRAFT_1713 0.25 -0.3
1,729,821 - EX28DRAFT_1713 0.25 +0.5
1,729,928 - EX28DRAFT_1713 0.32 +1.8
1,729,941 + EX28DRAFT_1713 0.33 +0.1
1,729,942 - EX28DRAFT_1713 0.33 +0.7
1,729,942 - EX28DRAFT_1713 0.33 -0.3
1,729,942 - EX28DRAFT_1713 0.33 +0.4
1,729,942 - EX28DRAFT_1713 0.33 +2.0
1,729,942 - EX28DRAFT_1713 0.33 +1.2
1,729,951 + EX28DRAFT_1713 0.34 +0.3
1,729,951 + EX28DRAFT_1713 0.34 +0.0
1,729,980 + EX28DRAFT_1713 0.36 +0.7
1,729,980 + EX28DRAFT_1713 0.36 -2.6
1,729,980 + EX28DRAFT_1713 0.36 -0.6
1,729,981 - EX28DRAFT_1713 0.36 +0.5
1,729,981 - EX28DRAFT_1713 0.36 +1.3
1,729,981 - EX28DRAFT_1713 0.36 +1.1
1,730,059 + EX28DRAFT_1713 0.41 -0.1
1,730,090 + EX28DRAFT_1713 0.43 +0.1
1,730,090 + EX28DRAFT_1713 0.43 +0.9
1,730,090 + EX28DRAFT_1713 0.43 +2.7
1,730,092 + EX28DRAFT_1713 0.44 +0.5
1,730,093 - EX28DRAFT_1713 0.44 -1.0
1,730,093 - EX28DRAFT_1713 0.44 +0.4
1,730,257 + EX28DRAFT_1713 0.55 +0.7
1,730,257 + EX28DRAFT_1713 0.55 -0.8
1,730,257 + EX28DRAFT_1713 0.55 -3.3
1,730,261 + EX28DRAFT_1713 0.55 -0.8
1,730,390 + EX28DRAFT_1713 0.64 -1.4
1,730,390 + EX28DRAFT_1713 0.64 -0.4
1,730,390 + EX28DRAFT_1713 0.64 +0.6

Or see this region's nucleotide sequence