Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1557

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
1,571,979	-				+0.2
1,572,030	-				-0.1
1,572,030	-				-2.8
1,572,030	-				+1.2
1,572,030	-				-0.7
1,572,092	+				+0.4
1,572,093	-				+0.7
1,572,093	-				-0.9
1,572,289	-		EX28DRAFT_1556	0.27	-2.7
1,572,397	+		EX28DRAFT_1556	0.39	-4.0
1,572,398	-		EX28DRAFT_1556	0.39	-0.0
1,572,398	-		EX28DRAFT_1556	0.39	-1.7
1,572,426	+		EX28DRAFT_1556	0.42	-0.8
1,572,428	+		EX28DRAFT_1556	0.42	+0.2
1,572,428	+		EX28DRAFT_1556	0.42	-0.6
1,572,447	+		EX28DRAFT_1556	0.44	+2.9
1,572,447	+		EX28DRAFT_1556	0.44	-1.4
1,572,450	+		EX28DRAFT_1556	0.44	-0.0
1,572,524	+		EX28DRAFT_1556	0.52	-0.6
1,572,524	+		EX28DRAFT_1556	0.52	-1.0
1,572,528	+		EX28DRAFT_1556	0.52	+0.1
1,572,535	+		EX28DRAFT_1556	0.53	+1.0
1,572,536	-		EX28DRAFT_1556	0.53	-1.7
1,572,681	+		EX28DRAFT_1556	0.69	-0.5
1,572,681	+		EX28DRAFT_1556	0.69	+0.0
1,572,844	-		EX28DRAFT_1556	0.86	-0.0
1,572,883	+		EX28DRAFT_1556	0.90	+0.2
1,572,960	+				+0.3
1,572,960	+				-2.1
1,572,962	+				+0.9
1,572,963	-				+0.6
1,572,963	-				-2.1
1,572,963	-				+1.7
1,572,963	-				-1.8
1,572,963	-				+1.4
1,573,037	+				-1.1
1,573,094	-				+1.3
1,573,118	+				-1.4
1,573,149	-				-0.5
1,573,149	-				+3.7
1,573,174	+				+0.8
1,573,174	+				+0.3
1,573,175	-				+0.7
1,573,175	-				+0.2
1,573,179	-				+0.3
1,573,338	-		EX28DRAFT_1557	0.11	-0.8
1,573,343	+		EX28DRAFT_1557	0.11	+0.4
1,573,396	+		EX28DRAFT_1557	0.13	-0.2
1,573,397	-		EX28DRAFT_1557	0.13	+0.1
1,573,397	-		EX28DRAFT_1557	0.13	+3.0
1,573,435	+		EX28DRAFT_1557	0.14	+0.5
1,573,436	-		EX28DRAFT_1557	0.14	+0.8
1,573,436	-		EX28DRAFT_1557	0.14	+0.3
1,573,436	-		EX28DRAFT_1557	0.14	+0.1
1,573,562	+		EX28DRAFT_1557	0.18	-0.4
1,573,594	-		EX28DRAFT_1557	0.19	+2.8
1,573,616	+		EX28DRAFT_1557	0.20	+0.5
1,573,616	+		EX28DRAFT_1557	0.20	+0.7
1,573,616	+		EX28DRAFT_1557	0.20	-0.7
1,573,616	+		EX28DRAFT_1557	0.20	+1.7
1,573,616	+		EX28DRAFT_1557	0.20	+1.3
1,573,617	-		EX28DRAFT_1557	0.20	+0.5
1,573,617	-		EX28DRAFT_1557	0.20	+2.6
1,573,617	-		EX28DRAFT_1557	0.20	-2.6
1,573,728	+		EX28DRAFT_1557	0.23	+0.7
1,573,785	-		EX28DRAFT_1557	0.25	-1.0
1,573,865	+		EX28DRAFT_1557	0.28	-0.5
1,573,867	+		EX28DRAFT_1557	0.28	+0.1
1,573,868	-		EX28DRAFT_1557	0.28	-0.6
1,573,887	+		EX28DRAFT_1557	0.28	+0.1
1,573,888	-		EX28DRAFT_1557	0.28	+1.2
1,573,933	+		EX28DRAFT_1557	0.30	+0.4
1,574,018	+		EX28DRAFT_1557	0.32	+0.2
1,574,132	-		EX28DRAFT_1557	0.36	-2.2
1,574,143	+		EX28DRAFT_1557	0.36	-0.2
1,574,227	+		EX28DRAFT_1557	0.39	+0.4
1,574,260	-		EX28DRAFT_1557	0.40	-0.5
1,574,350	-		EX28DRAFT_1557	0.43	+1.9
1,574,350	-		EX28DRAFT_1557	0.43	-1.2
1,574,353	-		EX28DRAFT_1557	0.43	+0.1
1,574,358	+		EX28DRAFT_1557	0.43	-0.5
1,574,359	-		EX28DRAFT_1557	0.43	-0.7
1,574,359	-		EX28DRAFT_1557	0.43	+0.1
1,574,373	+		EX28DRAFT_1557	0.43	+0.5
1,574,374	-		EX28DRAFT_1557	0.43	-0.4
1,574,401	+		EX28DRAFT_1557	0.44	-2.3
1,574,401	+		EX28DRAFT_1557	0.44	-1.9
1,574,402	-		EX28DRAFT_1557	0.44	-0.9
1,574,402	-		EX28DRAFT_1557	0.44	-1.0
1,574,406	-		EX28DRAFT_1557	0.44	+0.4
1,574,435	+		EX28DRAFT_1557	0.45	+0.5
1,574,435	+		EX28DRAFT_1557	0.45	+0.2
1,574,435	+		EX28DRAFT_1557	0.45	-1.0
1,574,435	+		EX28DRAFT_1557	0.45	+1.9
1,574,436	-		EX28DRAFT_1557	0.45	+0.7
1,574,436	-		EX28DRAFT_1557	0.45	-0.9
1,574,436	-		EX28DRAFT_1557	0.45	-1.8
1,574,436	-		EX28DRAFT_1557	0.45	+0.4
1,574,437	+		EX28DRAFT_1557	0.45	+2.8
1,574,437	+		EX28DRAFT_1557	0.45	+1.4
1,574,437	+		EX28DRAFT_1557	0.45	-0.2
1,574,437	+		EX28DRAFT_1557	0.45	-0.6
1,574,437	+		EX28DRAFT_1557	0.45	-0.9
1,574,438	-		EX28DRAFT_1557	0.45	+0.4
1,574,438	-		EX28DRAFT_1557	0.45	-1.5
1,574,438	-		EX28DRAFT_1557	0.45	+0.7
1,574,438	-		EX28DRAFT_1557	0.45	-0.2
1,574,438	-		EX28DRAFT_1557	0.45	-1.1
1,574,438	-		EX28DRAFT_1557	0.45	-0.8
1,574,465	+		EX28DRAFT_1557	0.46	+0.1
1,574,465	+		EX28DRAFT_1557	0.46	-1.0
1,574,469	+		EX28DRAFT_1557	0.46	-1.0
1,574,489	-		EX28DRAFT_1557	0.47	+0.4
1,574,489	-		EX28DRAFT_1557	0.47	+0.3
1,574,514	+		EX28DRAFT_1557	0.48	+0.6
1,574,553	+		EX28DRAFT_1557	0.49	-0.0
1,574,703	+		EX28DRAFT_1557	0.54	+0.6
1,574,704	-		EX28DRAFT_1557	0.54	-0.9
1,574,742	+		EX28DRAFT_1557	0.55	+0.0
1,574,742	+		EX28DRAFT_1557	0.55	-0.4
1,574,742	+		EX28DRAFT_1557	0.55	-2.2
1,574,742	+		EX28DRAFT_1557	0.55	-0.2
1,574,743	-		EX28DRAFT_1557	0.55	+0.1
1,574,743	-		EX28DRAFT_1557	0.55	+1.1
1,574,743	-		EX28DRAFT_1557	0.55	+0.5
1,574,743	-		EX28DRAFT_1557	0.55	+1.0
1,574,743	-		EX28DRAFT_1557	0.55	+0.6
1,574,746	+		EX28DRAFT_1557	0.55	-4.0
1,574,746	+		EX28DRAFT_1557	0.55	-0.6
1,574,746	+		EX28DRAFT_1557	0.55	-0.7
1,574,747	-		EX28DRAFT_1557	0.55	+0.2
1,574,896	+		EX28DRAFT_1557	0.60	+0.8
1,574,945	-		EX28DRAFT_1557	0.61	+1.5
1,574,970	+		EX28DRAFT_1557	0.62	-0.3
1,574,970	+		EX28DRAFT_1557	0.62	-0.0
1,574,971	-		EX28DRAFT_1557	0.62	+1.1
1,575,014	-		EX28DRAFT_1557	0.63	+1.2
1,575,033	+		EX28DRAFT_1557	0.64	-1.6
1,575,033	+		EX28DRAFT_1557	0.64	+0.1
1,575,034	-		EX28DRAFT_1557	0.64	+0.4
1,575,116	+		EX28DRAFT_1557	0.66	+1.4
1,575,117	-		EX28DRAFT_1557	0.66	-0.7
1,575,154	+		EX28DRAFT_1557	0.68	+2.0
1,575,155	-		EX28DRAFT_1557	0.68	+0.6
1,575,155	-		EX28DRAFT_1557	0.68	+0.5
1,575,179	-		EX28DRAFT_1557	0.68	+3.8
1,575,179	-		EX28DRAFT_1557	0.68	-0.6
1,575,180	+		EX28DRAFT_1557	0.68	+0.0
1,575,180	+		EX28DRAFT_1557	0.68	-1.9
1,575,181	-		EX28DRAFT_1557	0.68	+0.8
1,575,181	-		EX28DRAFT_1557	0.68	+0.6
1,575,343	-		EX28DRAFT_1557	0.73	-0.6
1,575,374	+		EX28DRAFT_1557	0.74	+0.2
1,575,375	-		EX28DRAFT_1557	0.74	+0.3
1,575,400	+		EX28DRAFT_1557	0.75	+3.0
1,575,400	+		EX28DRAFT_1557	0.75	+2.0
1,575,400	+		EX28DRAFT_1557	0.75	-0.0
1,575,401	-		EX28DRAFT_1557	0.75	+0.9
1,575,421	+		EX28DRAFT_1557	0.76	+1.3
1,575,421	+		EX28DRAFT_1557	0.76	-2.0
1,575,422	-		EX28DRAFT_1557	0.76	-0.3
1,575,666	-		EX28DRAFT_1557	0.84	+0.0
1,575,763	+		EX28DRAFT_1557	0.87	+0.3
1,575,764	-		EX28DRAFT_1557	0.87	+1.9
1,575,764	-		EX28DRAFT_1557	0.87	+1.7
1,575,764	-		EX28DRAFT_1557	0.87	+1.6
1,575,903	+				+0.8
1,575,903	+				-0.0
1,575,904	-				-1.9
1,575,904	-				-1.4
1,576,176	-				-0.5
1,576,188	+				+1.3
1,576,189	-				-1.1
1,576,189	-				-2.0
1,576,254	-				+1.0
1,576,260	+				+4.2
1,576,337	+		EX28DRAFT_1558	0.14	+1.8
1,576,444	-		EX28DRAFT_1558	0.33	-1.2
1,576,451	+		EX28DRAFT_1558	0.34	-3.9
1,576,451	+		EX28DRAFT_1558	0.34	+1.2
1,576,456	+		EX28DRAFT_1558	0.35	-0.7
1,576,461	-		EX28DRAFT_1558	0.36	-4.9
1,576,461	-		EX28DRAFT_1558	0.36	-3.5
1,576,483	-		EX28DRAFT_1558	0.40	-1.3
1,576,670	+		EX28DRAFT_1558	0.72	+0.3
1,576,670	+		EX28DRAFT_1558	0.72	-1.5
1,576,810	+				+0.9
1,576,841	+				-0.6
1,576,841	+				-3.4
1,576,841	+				+4.8
1,576,842	-				+1.4
1,576,843	+				-0.8
1,576,870	+				-0.4
1,576,882	-				+0.0
1,576,883	+				+1.0
1,576,883	+				+1.9
1,576,883	+				+0.5
1,576,884	-				+0.6
1,576,884	-				-0.2
1,576,906	-				-1.2
1,576,992	-		EX28DRAFT_1559	0.18	+1.8
1,577,111	+		EX28DRAFT_1559	0.38	+1.3
1,577,142	+		EX28DRAFT_1559	0.43	+0.5
1,577,142	+		EX28DRAFT_1559	0.43	+1.5
1,577,180	+		EX28DRAFT_1559	0.50	+0.4
1,577,181	-		EX28DRAFT_1559	0.50	+1.8