Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1417

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1416 and EX28DRAFT_1417 are separated by 7 nucleotidesEX28DRAFT_1417 and EX28DRAFT_1418 are separated by 11 nucleotidesEX28DRAFT_1418 and EX28DRAFT_1419 are separated by 8 nucleotides EX28DRAFT_1416: EX28DRAFT_1416 - phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 1,424,295 to 1,425,365 _1416 EX28DRAFT_1417: EX28DRAFT_1417 - phenylacetate-CoA oxygenase, PaaJ subunit, at 1,425,373 to 1,425,870 _1417 EX28DRAFT_1418: EX28DRAFT_1418 - phenylacetate-CoA oxygenase, PaaI subunit, at 1,425,882 to 1,426,628 _1418 EX28DRAFT_1419: EX28DRAFT_1419 - phenylacetate-CoA oxygenase, PaaH subunit, at 1,426,637 to 1,426,924 _1419 Position (kb) 1425 1426Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1424.402 kb on - strand, within EX28DRAFT_1416at 1424.445 kb on - strand, within EX28DRAFT_1416at 1424.633 kb on + strand, within EX28DRAFT_1416at 1424.863 kb on + strand, within EX28DRAFT_1416at 1425.023 kb on - strand, within EX28DRAFT_1416at 1425.078 kb on + strand, within EX28DRAFT_1416at 1425.079 kb on - strand, within EX28DRAFT_1416at 1425.196 kb on + strand, within EX28DRAFT_1416at 1425.196 kb on + strand, within EX28DRAFT_1416at 1425.197 kb on - strand, within EX28DRAFT_1416at 1425.379 kb on - strandat 1425.390 kb on - strandat 1425.411 kb on + strandat 1425.411 kb on + strandat 1425.628 kb on + strand, within EX28DRAFT_1417at 1425.704 kb on + strand, within EX28DRAFT_1417at 1425.705 kb on - strand, within EX28DRAFT_1417at 1425.705 kb on - strand, within EX28DRAFT_1417at 1425.983 kb on - strand, within EX28DRAFT_1418at 1425.987 kb on + strand, within EX28DRAFT_1418at 1426.248 kb on - strand, within EX28DRAFT_1418at 1426.465 kb on + strand, within EX28DRAFT_1418at 1426.466 kb on - strand, within EX28DRAFT_1418at 1426.642 kb on + strandat 1426.642 kb on + strandat 1426.642 kb on + strandat 1426.643 kb on - strandat 1426.643 kb on - strandat 1426.643 kb on - strandat 1426.643 kb on - strandat 1426.771 kb on + strand, within EX28DRAFT_1419at 1426.771 kb on + strand, within EX28DRAFT_1419at 1426.772 kb on - strand, within EX28DRAFT_1419

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,424,402 - EX28DRAFT_1416 0.10 -0.0
1,424,445 - EX28DRAFT_1416 0.14 -0.1
1,424,633 + EX28DRAFT_1416 0.32 +1.4
1,424,863 + EX28DRAFT_1416 0.53 +1.0
1,425,023 - EX28DRAFT_1416 0.68 +0.8
1,425,078 + EX28DRAFT_1416 0.73 +2.3
1,425,079 - EX28DRAFT_1416 0.73 -1.7
1,425,196 + EX28DRAFT_1416 0.84 -0.2
1,425,196 + EX28DRAFT_1416 0.84 -0.1
1,425,197 - EX28DRAFT_1416 0.84 +0.0
1,425,379 - +2.1
1,425,390 - -1.2
1,425,411 + +0.2
1,425,411 + -1.2
1,425,628 + EX28DRAFT_1417 0.51 -1.2
1,425,704 + EX28DRAFT_1417 0.66 -0.9
1,425,705 - EX28DRAFT_1417 0.67 -1.2
1,425,705 - EX28DRAFT_1417 0.67 -2.9
1,425,983 - EX28DRAFT_1418 0.14 +0.2
1,425,987 + EX28DRAFT_1418 0.14 +1.6
1,426,248 - EX28DRAFT_1418 0.49 +0.5
1,426,465 + EX28DRAFT_1418 0.78 -0.2
1,426,466 - EX28DRAFT_1418 0.78 -1.2
1,426,642 + -1.3
1,426,642 + -0.8
1,426,642 + +1.0
1,426,643 - -0.8
1,426,643 - +3.5
1,426,643 - +0.1
1,426,643 - -0.8
1,426,771 + EX28DRAFT_1419 0.47 -0.4
1,426,771 + EX28DRAFT_1419 0.47 +0.1
1,426,772 - EX28DRAFT_1419 0.47 -0.4

Or see this region's nucleotide sequence