Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1416 and EX28DRAFT_1417 are separated by 7 nucleotides EX28DRAFT_1417 and EX28DRAFT_1418 are separated by 11 nucleotides EX28DRAFT_1418 and EX28DRAFT_1419 are separated by 8 nucleotides
EX28DRAFT_1416: EX28DRAFT_1416 - phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 1,424,295 to 1,425,365
_1416
EX28DRAFT_1417: EX28DRAFT_1417 - phenylacetate-CoA oxygenase, PaaJ subunit, at 1,425,373 to 1,425,870
_1417
EX28DRAFT_1418: EX28DRAFT_1418 - phenylacetate-CoA oxygenase, PaaI subunit, at 1,425,882 to 1,426,628
_1418
EX28DRAFT_1419: EX28DRAFT_1419 - phenylacetate-CoA oxygenase, PaaH subunit, at 1,426,637 to 1,426,924
_1419
Position (kb)
1425
1426 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1424.402 kb on - strand, within EX28DRAFT_1416 at 1424.445 kb on - strand, within EX28DRAFT_1416 at 1424.633 kb on + strand, within EX28DRAFT_1416 at 1424.863 kb on + strand, within EX28DRAFT_1416 at 1425.023 kb on - strand, within EX28DRAFT_1416 at 1425.078 kb on + strand, within EX28DRAFT_1416 at 1425.079 kb on - strand, within EX28DRAFT_1416 at 1425.196 kb on + strand, within EX28DRAFT_1416 at 1425.196 kb on + strand, within EX28DRAFT_1416 at 1425.197 kb on - strand, within EX28DRAFT_1416 at 1425.379 kb on - strand at 1425.390 kb on - strand at 1425.411 kb on + strand at 1425.411 kb on + strand at 1425.628 kb on + strand, within EX28DRAFT_1417 at 1425.704 kb on + strand, within EX28DRAFT_1417 at 1425.705 kb on - strand, within EX28DRAFT_1417 at 1425.705 kb on - strand, within EX28DRAFT_1417 at 1425.983 kb on - strand, within EX28DRAFT_1418 at 1425.987 kb on + strand, within EX28DRAFT_1418 at 1426.248 kb on - strand, within EX28DRAFT_1418 at 1426.465 kb on + strand, within EX28DRAFT_1418 at 1426.466 kb on - strand, within EX28DRAFT_1418 at 1426.642 kb on + strand at 1426.642 kb on + strand at 1426.642 kb on + strand at 1426.643 kb on - strand at 1426.643 kb on - strand at 1426.643 kb on - strand at 1426.643 kb on - strand at 1426.771 kb on + strand, within EX28DRAFT_1419 at 1426.771 kb on + strand, within EX28DRAFT_1419 at 1426.772 kb on - strand, within EX28DRAFT_1419
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,424,402 - EX28DRAFT_1416 0.10 -0.0 1,424,445 - EX28DRAFT_1416 0.14 -0.1 1,424,633 + EX28DRAFT_1416 0.32 +1.4 1,424,863 + EX28DRAFT_1416 0.53 +1.0 1,425,023 - EX28DRAFT_1416 0.68 +0.8 1,425,078 + EX28DRAFT_1416 0.73 +2.3 1,425,079 - EX28DRAFT_1416 0.73 -1.7 1,425,196 + EX28DRAFT_1416 0.84 -0.2 1,425,196 + EX28DRAFT_1416 0.84 -0.1 1,425,197 - EX28DRAFT_1416 0.84 +0.0 1,425,379 - +2.1 1,425,390 - -1.2 1,425,411 + +0.2 1,425,411 + -1.2 1,425,628 + EX28DRAFT_1417 0.51 -1.2 1,425,704 + EX28DRAFT_1417 0.66 -0.9 1,425,705 - EX28DRAFT_1417 0.67 -1.2 1,425,705 - EX28DRAFT_1417 0.67 -2.9 1,425,983 - EX28DRAFT_1418 0.14 +0.2 1,425,987 + EX28DRAFT_1418 0.14 +1.6 1,426,248 - EX28DRAFT_1418 0.49 +0.5 1,426,465 + EX28DRAFT_1418 0.78 -0.2 1,426,466 - EX28DRAFT_1418 0.78 -1.2 1,426,642 + -1.3 1,426,642 + -0.8 1,426,642 + +1.0 1,426,643 - -0.8 1,426,643 - +3.5 1,426,643 - +0.1 1,426,643 - -0.8 1,426,771 + EX28DRAFT_1419 0.47 -0.4 1,426,771 + EX28DRAFT_1419 0.47 +0.1 1,426,772 - EX28DRAFT_1419 0.47 -0.4
Or see this region's nucleotide sequence