Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1276

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1274 and EX28DRAFT_1275 are separated by 12 nucleotidesEX28DRAFT_1275 and EX28DRAFT_1276 are separated by 57 nucleotidesEX28DRAFT_1276 and EX28DRAFT_1277 are separated by 64 nucleotidesEX28DRAFT_1277 and EX28DRAFT_1278 overlap by 4 nucleotidesEX28DRAFT_1278 and EX28DRAFT_1279 are separated by 62 nucleotides EX28DRAFT_1274: EX28DRAFT_1274 - hypothetical protein, at 1,291,120 to 1,294,545 _1274 EX28DRAFT_1275: EX28DRAFT_1275 - hypothetical protein, at 1,294,558 to 1,295,229 _1275 EX28DRAFT_1276: EX28DRAFT_1276 - Bacterial Ig-like domain (group 2), at 1,295,287 to 1,296,030 _1276 EX28DRAFT_1277: EX28DRAFT_1277 - hypothetical protein, at 1,296,095 to 1,296,478 _1277 EX28DRAFT_1278: EX28DRAFT_1278 - hypothetical protein, at 1,296,475 to 1,296,915 _1278 EX28DRAFT_1279: EX28DRAFT_1279 - hypothetical protein, at 1,296,978 to 1,297,265 _1279 Position (kb) 1295 1296 1297Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1294.601 kb on + strandat 1294.622 kb on + strandat 1294.656 kb on - strand, within EX28DRAFT_1275at 1294.693 kb on + strand, within EX28DRAFT_1275at 1294.748 kb on + strand, within EX28DRAFT_1275at 1294.799 kb on - strand, within EX28DRAFT_1275at 1294.799 kb on - strand, within EX28DRAFT_1275at 1295.165 kb on + strandat 1295.165 kb on + strandat 1295.165 kb on + strandat 1295.230 kb on - strandat 1295.611 kb on + strand, within EX28DRAFT_1276at 1295.661 kb on - strand, within EX28DRAFT_1276at 1295.766 kb on - strand, within EX28DRAFT_1276at 1295.874 kb on + strand, within EX28DRAFT_1276at 1295.911 kb on - strand, within EX28DRAFT_1276at 1296.025 kb on - strandat 1296.051 kb on - strandat 1296.051 kb on - strandat 1296.080 kb on - strandat 1296.135 kb on - strand, within EX28DRAFT_1277at 1296.135 kb on - strand, within EX28DRAFT_1277at 1296.228 kb on + strand, within EX28DRAFT_1277at 1296.393 kb on + strand, within EX28DRAFT_1277at 1296.393 kb on + strand, within EX28DRAFT_1277at 1296.394 kb on - strand, within EX28DRAFT_1277at 1296.394 kb on - strand, within EX28DRAFT_1277at 1296.394 kb on - strand, within EX28DRAFT_1277at 1296.513 kb on + strandat 1296.514 kb on - strandat 1296.514 kb on - strandat 1296.573 kb on - strand, within EX28DRAFT_1278at 1296.683 kb on + strand, within EX28DRAFT_1278at 1296.684 kb on - strand, within EX28DRAFT_1278at 1296.684 kb on - strand, within EX28DRAFT_1278at 1296.782 kb on + strand, within EX28DRAFT_1278at 1296.783 kb on - strand, within EX28DRAFT_1278at 1296.783 kb on - strand, within EX28DRAFT_1278at 1296.785 kb on + strand, within EX28DRAFT_1278at 1296.866 kb on + strand, within EX28DRAFT_1278at 1296.866 kb on + strand, within EX28DRAFT_1278at 1297.017 kb on - strand, within EX28DRAFT_1279

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,294,601 + +4.3
1,294,622 + -1.4
1,294,656 - EX28DRAFT_1275 0.15 +0.4
1,294,693 + EX28DRAFT_1275 0.20 +1.4
1,294,748 + EX28DRAFT_1275 0.28 +1.0
1,294,799 - EX28DRAFT_1275 0.36 -1.5
1,294,799 - EX28DRAFT_1275 0.36 +1.9
1,295,165 + -1.6
1,295,165 + -1.1
1,295,165 + +0.7
1,295,230 - -1.5
1,295,611 + EX28DRAFT_1276 0.44 +1.7
1,295,661 - EX28DRAFT_1276 0.50 +0.2
1,295,766 - EX28DRAFT_1276 0.64 +5.3
1,295,874 + EX28DRAFT_1276 0.79 +3.1
1,295,911 - EX28DRAFT_1276 0.84 -1.1
1,296,025 - +0.5
1,296,051 - +0.7
1,296,051 - -0.1
1,296,080 - +0.1
1,296,135 - EX28DRAFT_1277 0.10 +0.7
1,296,135 - EX28DRAFT_1277 0.10 +0.6
1,296,228 + EX28DRAFT_1277 0.35 -0.2
1,296,393 + EX28DRAFT_1277 0.78 +0.2
1,296,393 + EX28DRAFT_1277 0.78 -0.4
1,296,394 - EX28DRAFT_1277 0.78 +4.5
1,296,394 - EX28DRAFT_1277 0.78 +0.3
1,296,394 - EX28DRAFT_1277 0.78 +1.9
1,296,513 + -0.2
1,296,514 - +1.2
1,296,514 - -0.9
1,296,573 - EX28DRAFT_1278 0.22 +0.1
1,296,683 + EX28DRAFT_1278 0.47 -0.3
1,296,684 - EX28DRAFT_1278 0.47 +1.1
1,296,684 - EX28DRAFT_1278 0.47 -0.7
1,296,782 + EX28DRAFT_1278 0.70 +1.1
1,296,783 - EX28DRAFT_1278 0.70 -0.7
1,296,783 - EX28DRAFT_1278 0.70 +1.7
1,296,785 + EX28DRAFT_1278 0.70 -0.3
1,296,866 + EX28DRAFT_1278 0.89 -0.6
1,296,866 + EX28DRAFT_1278 0.89 +2.0
1,297,017 - EX28DRAFT_1279 0.14 +0.1

Or see this region's nucleotide sequence