Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1045 and EX28DRAFT_1046 are separated by 322 nucleotides EX28DRAFT_1046 and EX28DRAFT_1047 are separated by 112 nucleotides EX28DRAFT_1047 and EX28DRAFT_1048 overlap by 4 nucleotides
EX28DRAFT_1045: EX28DRAFT_1045 - Gamma-aminobutyrate permease and related permeases, at 1,055,911 to 1,057,407
_1045
EX28DRAFT_1046: EX28DRAFT_1046 - Transcriptional regulator, at 1,057,730 to 1,058,626
_1046
EX28DRAFT_1047: EX28DRAFT_1047 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 1,058,739 to 1,059,137
_1047
EX28DRAFT_1048: EX28DRAFT_1048 - PAS domain S-box, at 1,059,134 to 1,060,669
_1048
Position (kb) 1057
1058
1059 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1057.012 kb on - strand, within EX28DRAFT_1045 at 1057.012 kb on - strand, within EX28DRAFT_1045 at 1057.012 kb on - strand, within EX28DRAFT_1045 at 1057.014 kb on - strand, within EX28DRAFT_1045 at 1057.014 kb on - strand, within EX28DRAFT_1045 at 1057.067 kb on + strand, within EX28DRAFT_1045 at 1057.068 kb on - strand, within EX28DRAFT_1045 at 1057.085 kb on + strand, within EX28DRAFT_1045 at 1057.119 kb on - strand, within EX28DRAFT_1045 at 1057.209 kb on - strand, within EX28DRAFT_1045 at 1057.445 kb on + strand at 1057.804 kb on - strand at 1057.900 kb on - strand, within EX28DRAFT_1046 at 1058.017 kb on - strand, within EX28DRAFT_1046 at 1058.106 kb on + strand, within EX28DRAFT_1046 at 1058.113 kb on + strand, within EX28DRAFT_1046 at 1058.164 kb on + strand, within EX28DRAFT_1046 at 1058.165 kb on - strand, within EX28DRAFT_1046 at 1058.193 kb on - strand, within EX28DRAFT_1046 at 1058.240 kb on + strand, within EX28DRAFT_1046 at 1058.241 kb on - strand, within EX28DRAFT_1046 at 1058.585 kb on + strand at 1058.590 kb on + strand at 1058.591 kb on - strand at 1058.591 kb on - strand at 1058.621 kb on + strand at 1058.665 kb on + strand at 1058.735 kb on + strand at 1058.736 kb on - strand at 1058.736 kb on - strand at 1058.764 kb on + strand at 1058.765 kb on - strand at 1058.897 kb on + strand, within EX28DRAFT_1047 at 1058.947 kb on + strand, within EX28DRAFT_1047 at 1058.948 kb on - strand, within EX28DRAFT_1047 at 1058.975 kb on - strand, within EX28DRAFT_1047 at 1059.355 kb on + strand, within EX28DRAFT_1048 at 1059.558 kb on - strand, within EX28DRAFT_1048 at 1059.558 kb on - strand, within EX28DRAFT_1048 at 1059.558 kb on - strand, within EX28DRAFT_1048
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,057,012 - EX28DRAFT_1045 0.74 -1.6 1,057,012 - EX28DRAFT_1045 0.74 -4.6 1,057,012 - EX28DRAFT_1045 0.74 -3.6 1,057,014 - EX28DRAFT_1045 0.74 +0.2 1,057,014 - EX28DRAFT_1045 0.74 -0.6 1,057,067 + EX28DRAFT_1045 0.77 -1.1 1,057,068 - EX28DRAFT_1045 0.77 +0.4 1,057,085 + EX28DRAFT_1045 0.78 +2.6 1,057,119 - EX28DRAFT_1045 0.81 -0.4 1,057,209 - EX28DRAFT_1045 0.87 +0.8 1,057,445 + -1.7 1,057,804 - -0.4 1,057,900 - EX28DRAFT_1046 0.19 +1.8 1,058,017 - EX28DRAFT_1046 0.32 +2.1 1,058,106 + EX28DRAFT_1046 0.42 +0.5 1,058,113 + EX28DRAFT_1046 0.43 -0.6 1,058,164 + EX28DRAFT_1046 0.48 -1.5 1,058,165 - EX28DRAFT_1046 0.48 +1.9 1,058,193 - EX28DRAFT_1046 0.52 -0.7 1,058,240 + EX28DRAFT_1046 0.57 -1.6 1,058,241 - EX28DRAFT_1046 0.57 +2.0 1,058,585 + +0.2 1,058,590 + -0.9 1,058,591 - -0.5 1,058,591 - +0.3 1,058,621 + -0.1 1,058,665 + +0.9 1,058,735 + -2.4 1,058,736 - -2.3 1,058,736 - +3.4 1,058,764 + +4.6 1,058,765 - -1.6 1,058,897 + EX28DRAFT_1047 0.40 -0.7 1,058,947 + EX28DRAFT_1047 0.52 +0.2 1,058,948 - EX28DRAFT_1047 0.52 +0.1 1,058,975 - EX28DRAFT_1047 0.59 -0.7 1,059,355 + EX28DRAFT_1048 0.14 -0.9 1,059,558 - EX28DRAFT_1048 0.28 -0.6 1,059,558 - EX28DRAFT_1048 0.28 -5.1 1,059,558 - EX28DRAFT_1048 0.28 -0.1
Or see this region's nucleotide sequence