Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0984 and EX28DRAFT_0985 are separated by 17 nucleotides EX28DRAFT_0985 and EX28DRAFT_0986 are separated by 14 nucleotides EX28DRAFT_0986 and EX28DRAFT_0987 overlap by 7 nucleotides
EX28DRAFT_0984: EX28DRAFT_0984 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 985,111 to 986,163
_0984
EX28DRAFT_0985: EX28DRAFT_0985 - Sugar phosphate isomerases/epimerases, at 986,181 to 986,969
_0985
EX28DRAFT_0986: EX28DRAFT_0986 - Predicted dehydrogenases and related proteins, at 986,984 to 988,039
_0986
EX28DRAFT_0987: EX28DRAFT_0987 - Trehalose and maltose hydrolases (possible phosphorylases), at 988,033 to 990,312
_0987
Position (kb) 986
987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 986.045 kb on - strand, within EX28DRAFT_0984 at 986.104 kb on + strand at 986.104 kb on + strand at 986.105 kb on - strand at 986.113 kb on + strand at 986.113 kb on + strand at 986.113 kb on + strand at 986.114 kb on - strand at 986.114 kb on - strand at 986.241 kb on + strand at 986.311 kb on + strand, within EX28DRAFT_0985 at 986.311 kb on + strand, within EX28DRAFT_0985 at 986.673 kb on + strand, within EX28DRAFT_0985 at 986.673 kb on + strand, within EX28DRAFT_0985 at 986.674 kb on - strand, within EX28DRAFT_0985 at 986.721 kb on + strand, within EX28DRAFT_0985 at 986.726 kb on + strand, within EX28DRAFT_0985 at 986.727 kb on - strand, within EX28DRAFT_0985 at 986.877 kb on + strand, within EX28DRAFT_0985 at 986.877 kb on + strand, within EX28DRAFT_0985 at 986.877 kb on + strand, within EX28DRAFT_0985 at 986.886 kb on + strand, within EX28DRAFT_0985 at 986.886 kb on + strand, within EX28DRAFT_0985 at 986.886 kb on + strand, within EX28DRAFT_0985 at 986.886 kb on + strand, within EX28DRAFT_0985 at 986.887 kb on - strand, within EX28DRAFT_0985 at 986.887 kb on - strand, within EX28DRAFT_0985 at 986.895 kb on + strand at 986.895 kb on + strand at 986.895 kb on + strand at 986.895 kb on + strand at 986.895 kb on + strand at 986.895 kb on + strand at 986.896 kb on - strand at 986.952 kb on + strand at 986.968 kb on - strand at 986.996 kb on - strand at 986.996 kb on - strand at 987.149 kb on - strand, within EX28DRAFT_0986 at 987.441 kb on - strand, within EX28DRAFT_0986 at 987.547 kb on + strand, within EX28DRAFT_0986 at 987.548 kb on - strand, within EX28DRAFT_0986 at 987.566 kb on + strand, within EX28DRAFT_0986 at 987.566 kb on + strand, within EX28DRAFT_0986 at 987.567 kb on - strand, within EX28DRAFT_0986 at 987.607 kb on + strand, within EX28DRAFT_0986 at 987.608 kb on - strand, within EX28DRAFT_0986 at 987.608 kb on - strand, within EX28DRAFT_0986 at 987.712 kb on + strand, within EX28DRAFT_0986 at 987.831 kb on - strand, within EX28DRAFT_0986 at 987.852 kb on + strand, within EX28DRAFT_0986 at 987.895 kb on + strand, within EX28DRAFT_0986 at 987.895 kb on + strand, within EX28DRAFT_0986 at 987.895 kb on + strand, within EX28DRAFT_0986 at 987.896 kb on - strand, within EX28DRAFT_0986 at 987.896 kb on - strand, within EX28DRAFT_0986 at 987.904 kb on + strand, within EX28DRAFT_0986 at 987.905 kb on - strand, within EX28DRAFT_0986 at 987.998 kb on + strand at 988.032 kb on + strand at 988.033 kb on - strand at 988.037 kb on + strand at 988.050 kb on - strand at 988.087 kb on - strand at 988.087 kb on - strand at 988.087 kb on - strand at 988.090 kb on + strand at 988.090 kb on + strand at 988.091 kb on - strand at 988.153 kb on + strand at 988.153 kb on + strand at 988.154 kb on - strand at 988.177 kb on + strand at 988.177 kb on + strand at 988.178 kb on - strand at 988.178 kb on - strand at 988.178 kb on - strand at 988.567 kb on + strand, within EX28DRAFT_0987 at 988.583 kb on - strand, within EX28DRAFT_0987 at 989.020 kb on + strand, within EX28DRAFT_0987 at 989.020 kb on + strand, within EX28DRAFT_0987 at 989.023 kb on - strand, within EX28DRAFT_0987
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 986,045 - EX28DRAFT_0984 0.89 -2.1 986,104 + +0.3 986,104 + +1.4 986,105 - +0.7 986,113 + +0.2 986,113 + -2.2 986,113 + +0.6 986,114 - +1.4 986,114 - +2.4 986,241 + +0.5 986,311 + EX28DRAFT_0985 0.16 -0.6 986,311 + EX28DRAFT_0985 0.16 -0.8 986,673 + EX28DRAFT_0985 0.62 +1.0 986,673 + EX28DRAFT_0985 0.62 +0.7 986,674 - EX28DRAFT_0985 0.62 +1.9 986,721 + EX28DRAFT_0985 0.68 -0.7 986,726 + EX28DRAFT_0985 0.69 +2.1 986,727 - EX28DRAFT_0985 0.69 -1.1 986,877 + EX28DRAFT_0985 0.88 +5.1 986,877 + EX28DRAFT_0985 0.88 +1.4 986,877 + EX28DRAFT_0985 0.88 +0.3 986,886 + EX28DRAFT_0985 0.89 +1.6 986,886 + EX28DRAFT_0985 0.89 +4.9 986,886 + EX28DRAFT_0985 0.89 -1.5 986,886 + EX28DRAFT_0985 0.89 +0.0 986,887 - EX28DRAFT_0985 0.89 +1.1 986,887 - EX28DRAFT_0985 0.89 -3.1 986,895 + +1.9 986,895 + -3.0 986,895 + -2.4 986,895 + +2.9 986,895 + +0.7 986,895 + +1.4 986,896 - +0.4 986,952 + +0.9 986,968 - -0.1 986,996 - -2.0 986,996 - +0.2 987,149 - EX28DRAFT_0986 0.16 -0.7 987,441 - EX28DRAFT_0986 0.43 -0.1 987,547 + EX28DRAFT_0986 0.53 +1.6 987,548 - EX28DRAFT_0986 0.53 -1.0 987,566 + EX28DRAFT_0986 0.55 +1.4 987,566 + EX28DRAFT_0986 0.55 -0.2 987,567 - EX28DRAFT_0986 0.55 -0.5 987,607 + EX28DRAFT_0986 0.59 +0.3 987,608 - EX28DRAFT_0986 0.59 -0.5 987,608 - EX28DRAFT_0986 0.59 +3.8 987,712 + EX28DRAFT_0986 0.69 -0.6 987,831 - EX28DRAFT_0986 0.80 +1.5 987,852 + EX28DRAFT_0986 0.82 -0.7 987,895 + EX28DRAFT_0986 0.86 +0.7 987,895 + EX28DRAFT_0986 0.86 +1.3 987,895 + EX28DRAFT_0986 0.86 +0.4 987,896 - EX28DRAFT_0986 0.86 +3.5 987,896 - EX28DRAFT_0986 0.86 -1.2 987,904 + EX28DRAFT_0986 0.87 +1.0 987,905 - EX28DRAFT_0986 0.87 -2.7 987,998 + +0.8 988,032 + +0.7 988,033 - -0.1 988,037 + +0.3 988,050 - -1.5 988,087 - +0.4 988,087 - -2.5 988,087 - +1.0 988,090 + +2.0 988,090 + +3.0 988,091 - -0.8 988,153 + +0.2 988,153 + +0.2 988,154 - +1.2 988,177 + +1.3 988,177 + +0.6 988,178 - -2.7 988,178 - +0.9 988,178 - -0.4 988,567 + EX28DRAFT_0987 0.23 +1.2 988,583 - EX28DRAFT_0987 0.24 -0.5 989,020 + EX28DRAFT_0987 0.43 +1.1 989,020 + EX28DRAFT_0987 0.43 -1.2 989,023 - EX28DRAFT_0987 0.43 -0.7
Or see this region's nucleotide sequence