Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0957 and EX28DRAFT_0958 are separated by 37 nucleotides EX28DRAFT_0958 and EX28DRAFT_0959 are separated by 166 nucleotides EX28DRAFT_0959 and EX28DRAFT_0960 overlap by 4 nucleotides
EX28DRAFT_0957: EX28DRAFT_0957 - transcriptional regulator, DeoR family, at 955,879 to 956,631
_0957
EX28DRAFT_0958: EX28DRAFT_0958 - hypothetical protein, at 956,669 to 956,884
_0958
EX28DRAFT_0959: EX28DRAFT_0959 - Enoyl-CoA hydratase/carnithine racemase, at 957,051 to 957,920
_0959
EX28DRAFT_0960: EX28DRAFT_0960 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 957,917 to 959,908
_0960
Position (kb) 957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 956.194 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.341 kb on - strand, within EX28DRAFT_0957 at 956.424 kb on - strand, within EX28DRAFT_0957 at 956.496 kb on - strand, within EX28DRAFT_0957 at 956.559 kb on + strand at 956.631 kb on + strand at 956.631 kb on + strand at 956.632 kb on - strand at 956.632 kb on - strand at 956.642 kb on + strand at 956.940 kb on + strand at 956.955 kb on + strand at 956.956 kb on - strand at 957.050 kb on + strand at 957.051 kb on - strand at 957.051 kb on - strand at 957.060 kb on - strand at 957.071 kb on + strand at 957.123 kb on + strand at 957.194 kb on - strand, within EX28DRAFT_0959 at 957.194 kb on - strand, within EX28DRAFT_0959 at 957.196 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.286 kb on - strand, within EX28DRAFT_0959 at 957.304 kb on + strand, within EX28DRAFT_0959 at 957.558 kb on + strand, within EX28DRAFT_0959 at 957.609 kb on + strand, within EX28DRAFT_0959 at 957.609 kb on + strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.687 kb on + strand, within EX28DRAFT_0959 at 957.687 kb on + strand, within EX28DRAFT_0959 at 957.818 kb on - strand, within EX28DRAFT_0959 at 957.856 kb on - strand at 957.856 kb on - strand at 957.918 kb on + strand at 958.127 kb on - strand, within EX28DRAFT_0960 at 958.127 kb on - strand, within EX28DRAFT_0960 at 958.136 kb on - strand, within EX28DRAFT_0960 at 958.300 kb on + strand, within EX28DRAFT_0960 at 958.338 kb on + strand, within EX28DRAFT_0960 at 958.338 kb on + strand, within EX28DRAFT_0960 at 958.371 kb on - strand, within EX28DRAFT_0960 at 958.371 kb on - strand, within EX28DRAFT_0960 at 958.528 kb on - strand, within EX28DRAFT_0960 at 958.534 kb on + strand, within EX28DRAFT_0960 at 958.764 kb on + strand, within EX28DRAFT_0960 at 958.764 kb on + strand, within EX28DRAFT_0960 at 958.851 kb on + strand, within EX28DRAFT_0960 at 958.851 kb on + strand, within EX28DRAFT_0960 at 958.852 kb on - strand, within EX28DRAFT_0960 at 958.852 kb on - strand, within EX28DRAFT_0960 at 958.862 kb on - strand, within EX28DRAFT_0960
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 956,194 + EX28DRAFT_0957 0.42 -3.0 956,276 + EX28DRAFT_0957 0.53 -3.6 956,276 + EX28DRAFT_0957 0.53 +1.2 956,276 + EX28DRAFT_0957 0.53 -0.3 956,276 + EX28DRAFT_0957 0.53 -0.3 956,276 + EX28DRAFT_0957 0.53 -0.8 956,341 - EX28DRAFT_0957 0.61 -1.0 956,424 - EX28DRAFT_0957 0.72 -0.2 956,496 - EX28DRAFT_0957 0.82 -0.5 956,559 + -1.6 956,631 + -1.8 956,631 + +1.1 956,632 - -1.1 956,632 - -1.3 956,642 + -2.8 956,940 + +0.1 956,955 + +0.3 956,956 - +0.2 957,050 + +0.8 957,051 - -1.0 957,051 - -1.5 957,060 - -1.8 957,071 + +0.0 957,123 + +0.1 957,194 - EX28DRAFT_0959 0.16 +0.5 957,194 - EX28DRAFT_0959 0.16 +0.4 957,196 + EX28DRAFT_0959 0.17 -0.7 957,285 + EX28DRAFT_0959 0.27 +2.0 957,285 + EX28DRAFT_0959 0.27 -0.2 957,285 + EX28DRAFT_0959 0.27 -1.0 957,285 + EX28DRAFT_0959 0.27 -2.7 957,286 - EX28DRAFT_0959 0.27 -0.2 957,304 + EX28DRAFT_0959 0.29 +1.4 957,558 + EX28DRAFT_0959 0.58 +1.3 957,609 + EX28DRAFT_0959 0.64 +1.1 957,609 + EX28DRAFT_0959 0.64 +1.2 957,610 - EX28DRAFT_0959 0.64 -0.1 957,610 - EX28DRAFT_0959 0.64 +0.3 957,610 - EX28DRAFT_0959 0.64 +2.1 957,687 + EX28DRAFT_0959 0.73 +0.5 957,687 + EX28DRAFT_0959 0.73 +1.3 957,818 - EX28DRAFT_0959 0.88 +3.3 957,856 - +0.3 957,856 - +1.0 957,918 + -0.9 958,127 - EX28DRAFT_0960 0.11 +5.5 958,127 - EX28DRAFT_0960 0.11 +3.6 958,136 - EX28DRAFT_0960 0.11 +5.7 958,300 + EX28DRAFT_0960 0.19 +8.0 958,338 + EX28DRAFT_0960 0.21 +2.7 958,338 + EX28DRAFT_0960 0.21 +4.8 958,371 - EX28DRAFT_0960 0.23 +4.3 958,371 - EX28DRAFT_0960 0.23 +4.9 958,528 - EX28DRAFT_0960 0.31 +4.3 958,534 + EX28DRAFT_0960 0.31 +2.7 958,764 + EX28DRAFT_0960 0.43 +4.9 958,764 + EX28DRAFT_0960 0.43 +3.4 958,851 + EX28DRAFT_0960 0.47 +4.9 958,851 + EX28DRAFT_0960 0.47 +4.5 958,852 - EX28DRAFT_0960 0.47 +4.3 958,852 - EX28DRAFT_0960 0.47 +3.9 958,862 - EX28DRAFT_0960 0.47 +5.1
Or see this region's nucleotide sequence