Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0917 and EX28DRAFT_0918 are separated by 76 nucleotides EX28DRAFT_0918 and EX28DRAFT_0919 are separated by 162 nucleotides
EX28DRAFT_0917: EX28DRAFT_0917 - Phage protein D, at 919,016 to 920,185
_0917
EX28DRAFT_0918: EX28DRAFT_0918 - Ogr/Delta-like zinc finger, at 920,262 to 920,483
_0918
EX28DRAFT_0919: EX28DRAFT_0919 - hypothetical protein, at 920,646 to 921,272
_0919
Position (kb) 920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 919.312 kb on + strand, within EX28DRAFT_0917 at 919.351 kb on + strand, within EX28DRAFT_0917 at 919.430 kb on - strand, within EX28DRAFT_0917 at 919.685 kb on + strand, within EX28DRAFT_0917 at 919.686 kb on - strand, within EX28DRAFT_0917 at 919.686 kb on - strand, within EX28DRAFT_0917 at 919.686 kb on - strand, within EX28DRAFT_0917 at 919.759 kb on + strand, within EX28DRAFT_0917 at 919.760 kb on - strand, within EX28DRAFT_0917 at 919.825 kb on + strand, within EX28DRAFT_0917 at 919.907 kb on + strand, within EX28DRAFT_0917 at 919.908 kb on - strand, within EX28DRAFT_0917 at 920.014 kb on - strand, within EX28DRAFT_0917 at 920.059 kb on - strand, within EX28DRAFT_0917 at 920.059 kb on - strand, within EX28DRAFT_0917 at 920.114 kb on + strand at 920.381 kb on - strand, within EX28DRAFT_0918 at 920.395 kb on + strand, within EX28DRAFT_0918 at 920.488 kb on + strand at 920.489 kb on - strand at 920.489 kb on - strand at 920.565 kb on + strand at 920.573 kb on - strand at 920.672 kb on - strand at 920.673 kb on + strand at 920.741 kb on + strand, within EX28DRAFT_0919 at 920.945 kb on + strand, within EX28DRAFT_0919 at 920.964 kb on + strand, within EX28DRAFT_0919 at 920.965 kb on - strand, within EX28DRAFT_0919 at 920.965 kb on - strand, within EX28DRAFT_0919 at 920.997 kb on - strand, within EX28DRAFT_0919 at 921.010 kb on - strand, within EX28DRAFT_0919 at 921.064 kb on + strand, within EX28DRAFT_0919 at 921.086 kb on + strand, within EX28DRAFT_0919 at 921.104 kb on + strand, within EX28DRAFT_0919 at 921.129 kb on - strand, within EX28DRAFT_0919 at 921.129 kb on - strand, within EX28DRAFT_0919 at 921.151 kb on + strand, within EX28DRAFT_0919 at 921.151 kb on + strand, within EX28DRAFT_0919 at 921.152 kb on - strand, within EX28DRAFT_0919 at 921.152 kb on - strand, within EX28DRAFT_0919 at 921.152 kb on - strand, within EX28DRAFT_0919 at 921.161 kb on - strand, within EX28DRAFT_0919 at 921.161 kb on - strand, within EX28DRAFT_0919 at 921.161 kb on - strand, within EX28DRAFT_0919 at 921.166 kb on + strand, within EX28DRAFT_0919 at 921.196 kb on + strand, within EX28DRAFT_0919 at 921.234 kb on + strand at 921.235 kb on - strand at 921.304 kb on + strand at 921.305 kb on - strand at 921.305 kb on - strand at 921.437 kb on + strand at 921.437 kb on + strand at 921.452 kb on + strand at 921.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 919,312 + EX28DRAFT_0917 0.25 +1.0 919,351 + EX28DRAFT_0917 0.29 +2.2 919,430 - EX28DRAFT_0917 0.35 -2.8 919,685 + EX28DRAFT_0917 0.57 +0.3 919,686 - EX28DRAFT_0917 0.57 -1.0 919,686 - EX28DRAFT_0917 0.57 +2.1 919,686 - EX28DRAFT_0917 0.57 +0.6 919,759 + EX28DRAFT_0917 0.64 -0.4 919,760 - EX28DRAFT_0917 0.64 -1.5 919,825 + EX28DRAFT_0917 0.69 +1.5 919,907 + EX28DRAFT_0917 0.76 -1.0 919,908 - EX28DRAFT_0917 0.76 +0.9 920,014 - EX28DRAFT_0917 0.85 +1.0 920,059 - EX28DRAFT_0917 0.89 +1.5 920,059 - EX28DRAFT_0917 0.89 -0.3 920,114 + -0.9 920,381 - EX28DRAFT_0918 0.54 -1.4 920,395 + EX28DRAFT_0918 0.60 -3.7 920,488 + +0.8 920,489 - -1.8 920,489 - +0.4 920,565 + -1.5 920,573 - +0.6 920,672 - -1.9 920,673 + +1.6 920,741 + EX28DRAFT_0919 0.15 +0.8 920,945 + EX28DRAFT_0919 0.48 +0.3 920,964 + EX28DRAFT_0919 0.51 +0.6 920,965 - EX28DRAFT_0919 0.51 -1.9 920,965 - EX28DRAFT_0919 0.51 -0.5 920,997 - EX28DRAFT_0919 0.56 +0.7 921,010 - EX28DRAFT_0919 0.58 +1.3 921,064 + EX28DRAFT_0919 0.67 -0.1 921,086 + EX28DRAFT_0919 0.70 +0.5 921,104 + EX28DRAFT_0919 0.73 +0.0 921,129 - EX28DRAFT_0919 0.77 +1.0 921,129 - EX28DRAFT_0919 0.77 +0.6 921,151 + EX28DRAFT_0919 0.81 +0.3 921,151 + EX28DRAFT_0919 0.81 +2.4 921,152 - EX28DRAFT_0919 0.81 +1.5 921,152 - EX28DRAFT_0919 0.81 +4.5 921,152 - EX28DRAFT_0919 0.81 +1.4 921,161 - EX28DRAFT_0919 0.82 -1.3 921,161 - EX28DRAFT_0919 0.82 +0.1 921,161 - EX28DRAFT_0919 0.82 +0.7 921,166 + EX28DRAFT_0919 0.83 -0.5 921,196 + EX28DRAFT_0919 0.88 -0.2 921,234 + -0.8 921,235 - -1.3 921,304 + +1.4 921,305 - +0.7 921,305 - +0.3 921,437 + -1.9 921,437 + +0.8 921,452 + +2.9 921,452 + +2.2
Or see this region's nucleotide sequence