Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0887 and EX28DRAFT_0888 are separated by 200 nucleotides EX28DRAFT_0888 and EX28DRAFT_0889 are separated by 412 nucleotides EX28DRAFT_0889 and EX28DRAFT_0890 overlap by 4 nucleotides EX28DRAFT_0890 and EX28DRAFT_0891 are separated by 97 nucleotides
EX28DRAFT_0887: EX28DRAFT_0887 - Bacteriophage replication gene A protein (GPA), at 893,869 to 896,226
_0887
EX28DRAFT_0888: EX28DRAFT_0888 - hypothetical protein, at 896,427 to 896,684
_0888
EX28DRAFT_0889: EX28DRAFT_0889 - hypothetical protein, at 897,097 to 898,164
_0889
EX28DRAFT_0890: EX28DRAFT_0890 - hypothetical protein, at 898,161 to 898,856
_0890
EX28DRAFT_0891: EX28DRAFT_0891 - phage portal protein, PBSX family, at 898,954 to 899,979
_0891
Position (kb) 897
898
899 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 896.167 kb on - strand at 896.199 kb on + strand at 896.224 kb on + strand at 896.224 kb on + strand at 896.225 kb on - strand at 896.228 kb on + strand at 896.229 kb on - strand at 896.229 kb on - strand at 896.249 kb on + strand at 896.249 kb on + strand at 896.379 kb on - strand at 896.455 kb on + strand, within EX28DRAFT_0888 at 896.455 kb on + strand, within EX28DRAFT_0888 at 896.476 kb on + strand, within EX28DRAFT_0888 at 896.580 kb on + strand, within EX28DRAFT_0888 at 896.580 kb on + strand, within EX28DRAFT_0888 at 896.788 kb on + strand at 896.788 kb on + strand at 896.845 kb on + strand at 896.848 kb on - strand at 896.848 kb on - strand at 896.859 kb on - strand at 896.900 kb on - strand at 896.908 kb on - strand at 896.920 kb on - strand at 896.939 kb on - strand at 896.944 kb on + strand at 896.975 kb on - strand at 897.005 kb on - strand at 897.012 kb on + strand at 897.483 kb on + strand, within EX28DRAFT_0889 at 897.666 kb on + strand, within EX28DRAFT_0889 at 897.833 kb on + strand, within EX28DRAFT_0889 at 898.035 kb on - strand, within EX28DRAFT_0889 at 898.053 kb on - strand, within EX28DRAFT_0889 at 898.306 kb on + strand, within EX28DRAFT_0890 at 898.710 kb on + strand, within EX28DRAFT_0890 at 898.924 kb on - strand at 898.966 kb on + strand at 898.967 kb on - strand at 898.967 kb on - strand at 898.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 896,167 - -4.4 896,199 + +0.5 896,224 + -0.1 896,224 + -1.9 896,225 - -0.2 896,228 + +0.3 896,229 - -1.6 896,229 - -2.5 896,249 + -1.1 896,249 + +0.8 896,379 - -1.9 896,455 + EX28DRAFT_0888 0.11 -2.9 896,455 + EX28DRAFT_0888 0.11 +1.6 896,476 + EX28DRAFT_0888 0.19 +0.5 896,580 + EX28DRAFT_0888 0.59 -1.1 896,580 + EX28DRAFT_0888 0.59 +1.0 896,788 + -0.1 896,788 + +0.7 896,845 + -2.6 896,848 - -0.2 896,848 - +0.8 896,859 - +0.7 896,900 - +0.7 896,908 - +0.3 896,920 - -2.5 896,939 - -0.5 896,944 + +1.2 896,975 - +0.9 897,005 - +0.6 897,012 + -2.5 897,483 + EX28DRAFT_0889 0.36 +0.1 897,666 + EX28DRAFT_0889 0.53 -0.3 897,833 + EX28DRAFT_0889 0.69 -0.6 898,035 - EX28DRAFT_0889 0.88 +0.9 898,053 - EX28DRAFT_0889 0.90 -1.0 898,306 + EX28DRAFT_0890 0.21 +0.7 898,710 + EX28DRAFT_0890 0.79 +0.0 898,924 - -1.2 898,966 + +0.6 898,967 - -0.4 898,967 - -1.7 898,967 - +2.8
Or see this region's nucleotide sequence