Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0867

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0866 and EX28DRAFT_0867 are separated by 137 nucleotidesEX28DRAFT_0867 and EX28DRAFT_0868 are separated by 302 nucleotides EX28DRAFT_0866: EX28DRAFT_0866 - membrane protein, MarC family, at 879,379 to 880,026 _0866 EX28DRAFT_0867: EX28DRAFT_0867 - hypothetical protein, at 880,164 to 880,495 _0867 EX28DRAFT_0868: EX28DRAFT_0868 - ABC-type oligopeptide transport system, periplasmic component, at 880,798 to 882,429 _0868 Position (kb) 880 881Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 879.204 kb on - strandat 879.241 kb on - strandat 879.242 kb on + strandat 879.242 kb on + strandat 879.242 kb on + strandat 879.242 kb on + strandat 879.242 kb on + strandat 879.243 kb on - strandat 879.246 kb on + strandat 879.247 kb on - strandat 879.248 kb on + strandat 879.249 kb on - strandat 879.252 kb on + strandat 879.297 kb on + strandat 879.298 kb on - strandat 879.298 kb on - strandat 879.306 kb on - strandat 879.306 kb on - strandat 879.409 kb on + strandat 879.410 kb on - strandat 879.475 kb on - strand, within EX28DRAFT_0866at 879.477 kb on + strand, within EX28DRAFT_0866at 879.487 kb on + strand, within EX28DRAFT_0866at 879.487 kb on + strand, within EX28DRAFT_0866at 879.511 kb on - strand, within EX28DRAFT_0866at 879.511 kb on - strand, within EX28DRAFT_0866at 879.539 kb on + strand, within EX28DRAFT_0866at 879.539 kb on + strand, within EX28DRAFT_0866at 879.540 kb on - strand, within EX28DRAFT_0866at 879.540 kb on - strand, within EX28DRAFT_0866at 879.543 kb on + strand, within EX28DRAFT_0866at 879.543 kb on + strand, within EX28DRAFT_0866at 879.544 kb on - strand, within EX28DRAFT_0866at 879.548 kb on + strand, within EX28DRAFT_0866at 879.549 kb on - strand, within EX28DRAFT_0866at 879.549 kb on - strand, within EX28DRAFT_0866at 879.549 kb on - strand, within EX28DRAFT_0866at 879.730 kb on - strand, within EX28DRAFT_0866at 879.942 kb on + strand, within EX28DRAFT_0866at 880.268 kb on + strand, within EX28DRAFT_0867at 880.302 kb on + strand, within EX28DRAFT_0867at 880.302 kb on + strand, within EX28DRAFT_0867at 880.457 kb on - strand, within EX28DRAFT_0867at 880.490 kb on - strandat 880.542 kb on + strandat 880.570 kb on + strandat 880.677 kb on - strandat 880.730 kb on - strandat 880.730 kb on - strandat 880.774 kb on + strandat 880.774 kb on + strandat 880.774 kb on + strandat 880.776 kb on + strandat 880.789 kb on - strandat 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.030 kb on + strand, within EX28DRAFT_0868at 881.055 kb on - strand, within EX28DRAFT_0868at 881.158 kb on + strand, within EX28DRAFT_0868at 881.160 kb on + strand, within EX28DRAFT_0868at 881.268 kb on + strand, within EX28DRAFT_0868at 881.282 kb on + strand, within EX28DRAFT_0868at 881.302 kb on - strand, within EX28DRAFT_0868at 881.335 kb on + strand, within EX28DRAFT_0868at 881.342 kb on - strand, within EX28DRAFT_0868at 881.342 kb on - strand, within EX28DRAFT_0868at 881.342 kb on - strand, within EX28DRAFT_0868at 881.446 kb on + strand, within EX28DRAFT_0868at 881.447 kb on - strand, within EX28DRAFT_0868at 881.447 kb on - strand, within EX28DRAFT_0868at 881.478 kb on + strand, within EX28DRAFT_0868at 881.479 kb on - strand, within EX28DRAFT_0868at 881.479 kb on - strand, within EX28DRAFT_0868at 881.479 kb on - strand, within EX28DRAFT_0868

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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879,204 - +3.4
879,241 - -0.0
879,242 + -0.5
879,242 + +1.1
879,242 + +1.7
879,242 + +1.1
879,242 + +0.5
879,243 - -2.4
879,246 + +0.7
879,247 - +0.2
879,248 + -2.0
879,249 - +0.9
879,252 + -1.0
879,297 + +5.3
879,298 - -0.5
879,298 - +0.3
879,306 - -0.4
879,306 - -0.9
879,409 + +0.0
879,410 - +1.5
879,475 - EX28DRAFT_0866 0.15 -0.3
879,477 + EX28DRAFT_0866 0.15 -0.8
879,487 + EX28DRAFT_0866 0.17 -0.3
879,487 + EX28DRAFT_0866 0.17 +0.0
879,511 - EX28DRAFT_0866 0.20 +0.5
879,511 - EX28DRAFT_0866 0.20 -3.6
879,539 + EX28DRAFT_0866 0.25 -1.8
879,539 + EX28DRAFT_0866 0.25 -0.3
879,540 - EX28DRAFT_0866 0.25 +1.1
879,540 - EX28DRAFT_0866 0.25 +0.2
879,543 + EX28DRAFT_0866 0.25 +1.4
879,543 + EX28DRAFT_0866 0.25 -0.0
879,544 - EX28DRAFT_0866 0.25 +0.5
879,548 + EX28DRAFT_0866 0.26 -0.1
879,549 - EX28DRAFT_0866 0.26 +0.5
879,549 - EX28DRAFT_0866 0.26 +1.4
879,549 - EX28DRAFT_0866 0.26 -1.1
879,730 - EX28DRAFT_0866 0.54 +1.0
879,942 + EX28DRAFT_0866 0.87 -0.4
880,268 + EX28DRAFT_0867 0.31 +0.4
880,302 + EX28DRAFT_0867 0.42 +3.9
880,302 + EX28DRAFT_0867 0.42 -0.0
880,457 - EX28DRAFT_0867 0.88 +0.5
880,490 - -2.6
880,542 + -0.3
880,570 + -0.7
880,677 - -0.2
880,730 - +1.5
880,730 - +0.5
880,774 + +2.3
880,774 + -1.1
880,774 + +1.3
880,776 + +1.2
880,789 - -0.6
881,030 + EX28DRAFT_0868 0.14 +3.1
881,030 + EX28DRAFT_0868 0.14 -1.1
881,030 + EX28DRAFT_0868 0.14 -0.1
881,030 + EX28DRAFT_0868 0.14 +0.6
881,030 + EX28DRAFT_0868 0.14 -0.5
881,030 + EX28DRAFT_0868 0.14 -2.5
881,055 - EX28DRAFT_0868 0.16 +2.1
881,158 + EX28DRAFT_0868 0.22 +0.6
881,160 + EX28DRAFT_0868 0.22 +2.0
881,268 + EX28DRAFT_0868 0.29 -2.1
881,282 + EX28DRAFT_0868 0.30 +1.0
881,302 - EX28DRAFT_0868 0.31 -1.9
881,335 + EX28DRAFT_0868 0.33 +2.3
881,342 - EX28DRAFT_0868 0.33 -1.3
881,342 - EX28DRAFT_0868 0.33 +0.7
881,342 - EX28DRAFT_0868 0.33 +1.1
881,446 + EX28DRAFT_0868 0.40 -0.2
881,447 - EX28DRAFT_0868 0.40 -0.3
881,447 - EX28DRAFT_0868 0.40 -0.7
881,478 + EX28DRAFT_0868 0.42 -2.3
881,479 - EX28DRAFT_0868 0.42 -3.3
881,479 - EX28DRAFT_0868 0.42 -3.7
881,479 - EX28DRAFT_0868 0.42 -1.0

Or see this region's nucleotide sequence