Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0842 and EX28DRAFT_0843 are separated by 2 nucleotides EX28DRAFT_0843 and EX28DRAFT_0844 are separated by 9 nucleotides EX28DRAFT_0844 and EX28DRAFT_0845 are separated by 13 nucleotides
EX28DRAFT_0842: EX28DRAFT_0842 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 845,369 to 846,616
_0842
EX28DRAFT_0843: EX28DRAFT_0843 - nitrate ABC transporter, permease protein, at 846,619 to 847,497
_0843
EX28DRAFT_0844: EX28DRAFT_0844 - nitrate transport ATP-binding subunits C and D, at 847,507 to 848,295
_0844
EX28DRAFT_0845: EX28DRAFT_0845 - nitrite reductase [NAD(P)H], large subunit/nitrite reductase [NAD(P)H], small subunit, at 848,309 to 852,295
_0845
Position (kb) 846
847
848 Strain fitness (log2 ratio) -2
-1
0
1
2 at 845.837 kb on + strand, within EX28DRAFT_0842 at 845.838 kb on - strand, within EX28DRAFT_0842 at 845.885 kb on + strand, within EX28DRAFT_0842 at 845.885 kb on + strand, within EX28DRAFT_0842 at 845.888 kb on + strand, within EX28DRAFT_0842 at 845.889 kb on - strand, within EX28DRAFT_0842 at 846.068 kb on - strand, within EX28DRAFT_0842 at 846.068 kb on - strand, within EX28DRAFT_0842 at 846.257 kb on + strand, within EX28DRAFT_0842 at 846.258 kb on - strand, within EX28DRAFT_0842 at 846.258 kb on - strand, within EX28DRAFT_0842 at 846.363 kb on - strand, within EX28DRAFT_0842 at 846.376 kb on + strand, within EX28DRAFT_0842 at 846.619 kb on - strand at 846.929 kb on + strand, within EX28DRAFT_0843 at 847.043 kb on + strand, within EX28DRAFT_0843 at 847.088 kb on + strand, within EX28DRAFT_0843 at 847.172 kb on + strand, within EX28DRAFT_0843 at 847.479 kb on + strand at 848.234 kb on - strand at 848.426 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 845,837 + EX28DRAFT_0842 0.38 +0.7 845,838 - EX28DRAFT_0842 0.38 +0.9 845,885 + EX28DRAFT_0842 0.41 -0.3 845,885 + EX28DRAFT_0842 0.41 +0.2 845,888 + EX28DRAFT_0842 0.42 -0.5 845,889 - EX28DRAFT_0842 0.42 +2.1 846,068 - EX28DRAFT_0842 0.56 +0.6 846,068 - EX28DRAFT_0842 0.56 +1.1 846,257 + EX28DRAFT_0842 0.71 +1.9 846,258 - EX28DRAFT_0842 0.71 +0.3 846,258 - EX28DRAFT_0842 0.71 -0.4 846,363 - EX28DRAFT_0842 0.80 +1.3 846,376 + EX28DRAFT_0842 0.81 -1.3 846,619 - +0.1 846,929 + EX28DRAFT_0843 0.35 -1.7 847,043 + EX28DRAFT_0843 0.48 -2.3 847,088 + EX28DRAFT_0843 0.53 +1.0 847,172 + EX28DRAFT_0843 0.63 -2.7 847,479 + -2.4 848,234 - +0.4 848,426 + +0.8
Or see this region's nucleotide sequence