Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0814

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0812 and EX28DRAFT_0813 are separated by 75 nucleotidesEX28DRAFT_0813 and EX28DRAFT_0814 are separated by 3 nucleotidesEX28DRAFT_0814 and EX28DRAFT_0815 overlap by 8 nucleotidesEX28DRAFT_0815 and EX28DRAFT_0816 are separated by 71 nucleotides EX28DRAFT_0812: EX28DRAFT_0812 - hypothetical protein, at 815,278 to 816,354 _0812 EX28DRAFT_0813: EX28DRAFT_0813 - Uncharacterized conserved protein, at 816,430 to 816,870 _0813 EX28DRAFT_0814: EX28DRAFT_0814 - RHS repeat-associated core domain, at 816,874 to 821,232 _0814 EX28DRAFT_0815: EX28DRAFT_0815 - Macro domain, at 821,225 to 821,977 _0815 EX28DRAFT_0816: EX28DRAFT_0816 - Anaphase-promoting complex, cyclosome, subunit 3, at 822,049 to 822,468 _0816 Position (kb) 816 817 818 819 820 821 822Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 815.886 kb on + strand, within EX28DRAFT_0812at 815.886 kb on + strand, within EX28DRAFT_0812at 815.911 kb on - strand, within EX28DRAFT_0812at 815.964 kb on - strand, within EX28DRAFT_0812at 815.964 kb on - strand, within EX28DRAFT_0812at 815.990 kb on + strand, within EX28DRAFT_0812at 815.994 kb on + strand, within EX28DRAFT_0812at 816.037 kb on - strand, within EX28DRAFT_0812at 816.037 kb on - strand, within EX28DRAFT_0812at 816.037 kb on - strand, within EX28DRAFT_0812at 816.042 kb on - strand, within EX28DRAFT_0812at 816.042 kb on - strand, within EX28DRAFT_0812at 816.187 kb on - strand, within EX28DRAFT_0812at 816.187 kb on - strand, within EX28DRAFT_0812at 816.247 kb on + strandat 816.271 kb on - strandat 816.281 kb on - strandat 816.323 kb on + strandat 816.352 kb on + strandat 816.356 kb on - strandat 816.407 kb on + strandat 816.410 kb on + strandat 816.429 kb on + strandat 816.437 kb on - strandat 816.501 kb on + strand, within EX28DRAFT_0813at 816.502 kb on - strand, within EX28DRAFT_0813at 816.647 kb on + strand, within EX28DRAFT_0813at 816.832 kb on - strandat 816.868 kb on + strandat 816.868 kb on + strandat 817.151 kb on + strandat 817.912 kb on + strand, within EX28DRAFT_0814at 817.912 kb on + strand, within EX28DRAFT_0814at 817.913 kb on - strand, within EX28DRAFT_0814at 817.913 kb on - strand, within EX28DRAFT_0814at 817.913 kb on - strand, within EX28DRAFT_0814at 817.913 kb on - strand, within EX28DRAFT_0814at 817.939 kb on - strand, within EX28DRAFT_0814at 818.002 kb on + strand, within EX28DRAFT_0814at 818.002 kb on + strand, within EX28DRAFT_0814at 818.089 kb on + strand, within EX28DRAFT_0814at 818.089 kb on + strand, within EX28DRAFT_0814at 818.089 kb on + strand, within EX28DRAFT_0814at 818.091 kb on + strand, within EX28DRAFT_0814at 818.092 kb on - strand, within EX28DRAFT_0814at 818.220 kb on - strand, within EX28DRAFT_0814at 818.386 kb on + strand, within EX28DRAFT_0814at 818.387 kb on - strand, within EX28DRAFT_0814at 818.518 kb on + strand, within EX28DRAFT_0814at 818.708 kb on - strand, within EX28DRAFT_0814at 818.962 kb on + strand, within EX28DRAFT_0814at 818.963 kb on - strand, within EX28DRAFT_0814at 819.009 kb on + strand, within EX28DRAFT_0814at 819.214 kb on + strand, within EX28DRAFT_0814at 819.215 kb on - strand, within EX28DRAFT_0814at 819.250 kb on - strand, within EX28DRAFT_0814at 819.538 kb on + strand, within EX28DRAFT_0814at 819.539 kb on - strand, within EX28DRAFT_0814at 819.572 kb on + strand, within EX28DRAFT_0814at 819.573 kb on - strand, within EX28DRAFT_0814at 819.634 kb on + strand, within EX28DRAFT_0814at 819.635 kb on - strand, within EX28DRAFT_0814at 819.760 kb on + strand, within EX28DRAFT_0814at 819.970 kb on + strand, within EX28DRAFT_0814at 820.249 kb on + strand, within EX28DRAFT_0814at 820.320 kb on - strand, within EX28DRAFT_0814at 820.471 kb on + strand, within EX28DRAFT_0814at 820.472 kb on - strand, within EX28DRAFT_0814at 820.472 kb on - strand, within EX28DRAFT_0814at 820.495 kb on + strand, within EX28DRAFT_0814at 820.495 kb on + strand, within EX28DRAFT_0814at 820.661 kb on + strand, within EX28DRAFT_0814at 820.726 kb on + strand, within EX28DRAFT_0814at 820.726 kb on + strand, within EX28DRAFT_0814at 820.727 kb on - strand, within EX28DRAFT_0814at 820.744 kb on + strand, within EX28DRAFT_0814at 820.745 kb on - strand, within EX28DRAFT_0814at 820.881 kb on + strandat 820.927 kb on - strandat 820.946 kb on + strandat 820.946 kb on + strandat 820.946 kb on + strandat 820.946 kb on + strandat 820.947 kb on - strandat 820.947 kb on - strandat 820.947 kb on - strandat 820.947 kb on - strandat 820.972 kb on + strandat 821.070 kb on - strandat 821.071 kb on + strandat 821.072 kb on - strandat 822.219 kb on + strand, within EX28DRAFT_0816

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
815,886 + EX28DRAFT_0812 0.56 -1.9
815,886 + EX28DRAFT_0812 0.56 +0.4
815,911 - EX28DRAFT_0812 0.59 +0.3
815,964 - EX28DRAFT_0812 0.64 +0.6
815,964 - EX28DRAFT_0812 0.64 -0.3
815,990 + EX28DRAFT_0812 0.66 +0.2
815,994 + EX28DRAFT_0812 0.66 +1.0
816,037 - EX28DRAFT_0812 0.70 +0.6
816,037 - EX28DRAFT_0812 0.70 -2.1
816,037 - EX28DRAFT_0812 0.70 -0.5
816,042 - EX28DRAFT_0812 0.71 +1.0
816,042 - EX28DRAFT_0812 0.71 -1.2
816,187 - EX28DRAFT_0812 0.84 -1.5
816,187 - EX28DRAFT_0812 0.84 +1.3
816,247 + +0.5
816,271 - +0.9
816,281 - +1.5
816,323 + -0.7
816,352 + +1.1
816,356 - -1.1
816,407 + +1.0
816,410 + -0.5
816,429 + -0.2
816,437 - -0.7
816,501 + EX28DRAFT_0813 0.16 -0.9
816,502 - EX28DRAFT_0813 0.16 +0.1
816,647 + EX28DRAFT_0813 0.49 -1.0
816,832 - -3.5
816,868 + -0.7
816,868 + +0.3
817,151 + +2.1
817,912 + EX28DRAFT_0814 0.24 -1.7
817,912 + EX28DRAFT_0814 0.24 +0.3
817,913 - EX28DRAFT_0814 0.24 +0.7
817,913 - EX28DRAFT_0814 0.24 -0.0
817,913 - EX28DRAFT_0814 0.24 +0.8
817,913 - EX28DRAFT_0814 0.24 -0.7
817,939 - EX28DRAFT_0814 0.24 -1.6
818,002 + EX28DRAFT_0814 0.26 +0.8
818,002 + EX28DRAFT_0814 0.26 -2.8
818,089 + EX28DRAFT_0814 0.28 +0.4
818,089 + EX28DRAFT_0814 0.28 +1.4
818,089 + EX28DRAFT_0814 0.28 -0.2
818,091 + EX28DRAFT_0814 0.28 -0.7
818,092 - EX28DRAFT_0814 0.28 -1.0
818,220 - EX28DRAFT_0814 0.31 -0.6
818,386 + EX28DRAFT_0814 0.35 +0.7
818,387 - EX28DRAFT_0814 0.35 -2.2
818,518 + EX28DRAFT_0814 0.38 +1.9
818,708 - EX28DRAFT_0814 0.42 +0.7
818,962 + EX28DRAFT_0814 0.48 -1.5
818,963 - EX28DRAFT_0814 0.48 +0.4
819,009 + EX28DRAFT_0814 0.49 -0.3
819,214 + EX28DRAFT_0814 0.54 -1.1
819,215 - EX28DRAFT_0814 0.54 -0.2
819,250 - EX28DRAFT_0814 0.55 -2.5
819,538 + EX28DRAFT_0814 0.61 +0.6
819,539 - EX28DRAFT_0814 0.61 -2.1
819,572 + EX28DRAFT_0814 0.62 +0.7
819,573 - EX28DRAFT_0814 0.62 +0.4
819,634 + EX28DRAFT_0814 0.63 -0.2
819,635 - EX28DRAFT_0814 0.63 +0.3
819,760 + EX28DRAFT_0814 0.66 -2.1
819,970 + EX28DRAFT_0814 0.71 -0.4
820,249 + EX28DRAFT_0814 0.77 -1.4
820,320 - EX28DRAFT_0814 0.79 -2.1
820,471 + EX28DRAFT_0814 0.83 +1.1
820,472 - EX28DRAFT_0814 0.83 -0.1
820,472 - EX28DRAFT_0814 0.83 -0.4
820,495 + EX28DRAFT_0814 0.83 -0.7
820,495 + EX28DRAFT_0814 0.83 -0.5
820,661 + EX28DRAFT_0814 0.87 +1.1
820,726 + EX28DRAFT_0814 0.88 +0.2
820,726 + EX28DRAFT_0814 0.88 +0.9
820,727 - EX28DRAFT_0814 0.88 -0.4
820,744 + EX28DRAFT_0814 0.89 +0.9
820,745 - EX28DRAFT_0814 0.89 +2.4
820,881 + -0.1
820,927 - +1.1
820,946 + +0.7
820,946 + -0.3
820,946 + -0.5
820,946 + -0.1
820,947 - -0.1
820,947 - -1.2
820,947 - -1.4
820,947 - -0.3
820,972 + -1.9
821,070 - +0.8
821,071 + +0.4
821,072 - +0.9
822,219 + EX28DRAFT_0816 0.40 +0.5

Or see this region's nucleotide sequence