Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0783 and EX28DRAFT_0784 overlap by 22 nucleotides EX28DRAFT_0784 and EX28DRAFT_0785 are separated by 22 nucleotides
EX28DRAFT_0783: EX28DRAFT_0783 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 781,004 to 781,762
_0783
EX28DRAFT_0784: EX28DRAFT_0784 - Transcriptional regulator, at 781,741 to 782,637
_0784
EX28DRAFT_0785: EX28DRAFT_0785 - oxidoreductase alpha (molybdopterin) subunit, at 782,660 to 784,948
_0785
Position (kb) 782
783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 781.763 kb on + strand at 781.763 kb on + strand at 781.764 kb on - strand at 781.764 kb on - strand at 781.764 kb on - strand at 781.764 kb on - strand at 782.013 kb on + strand, within EX28DRAFT_0784 at 782.201 kb on + strand, within EX28DRAFT_0784 at 782.276 kb on + strand, within EX28DRAFT_0784 at 782.276 kb on + strand, within EX28DRAFT_0784 at 782.360 kb on - strand, within EX28DRAFT_0784 at 782.628 kb on + strand at 782.632 kb on - strand at 782.641 kb on + strand at 782.662 kb on - strand at 782.715 kb on + strand at 782.745 kb on + strand at 782.782 kb on - strand at 782.809 kb on + strand at 782.810 kb on - strand at 782.811 kb on + strand at 782.812 kb on - strand at 782.976 kb on + strand, within EX28DRAFT_0785 at 782.991 kb on + strand, within EX28DRAFT_0785 at 782.991 kb on + strand, within EX28DRAFT_0785 at 782.992 kb on - strand, within EX28DRAFT_0785 at 783.109 kb on + strand, within EX28DRAFT_0785 at 783.109 kb on + strand, within EX28DRAFT_0785 at 783.110 kb on - strand, within EX28DRAFT_0785 at 783.168 kb on + strand, within EX28DRAFT_0785 at 783.730 kb on + strand, within EX28DRAFT_0785 at 783.731 kb on - strand, within EX28DRAFT_0785 at 783.829 kb on + strand, within EX28DRAFT_0785 at 783.829 kb on + strand, within EX28DRAFT_0785 at 783.984 kb on - strand, within EX28DRAFT_0785 at 784.006 kb on + strand, within EX28DRAFT_0785 at 784.007 kb on - strand, within EX28DRAFT_0785 at 784.137 kb on + strand, within EX28DRAFT_0785 at 784.393 kb on + strand, within EX28DRAFT_0785 at 784.393 kb on + strand, within EX28DRAFT_0785 at 784.485 kb on + strand, within EX28DRAFT_0785 at 784.485 kb on + strand, within EX28DRAFT_0785 at 784.485 kb on + strand, within EX28DRAFT_0785 at 784.753 kb on + strand at 784.753 kb on + strand at 784.754 kb on - strand at 784.754 kb on - strand at 784.852 kb on + strand at 784.857 kb on - strand at 784.908 kb on + strand at 784.908 kb on + strand at 784.908 kb on + strand at 784.909 kb on - strand at 784.943 kb on - strand at 785.011 kb on + strand at 785.012 kb on - strand at 785.424 kb on + strand at 785.424 kb on + strand at 785.467 kb on + strand at 785.507 kb on + strand at 785.508 kb on - strand at 785.509 kb on + strand at 785.509 kb on + strand at 785.510 kb on - strand at 785.510 kb on - strand at 785.693 kb on + strand at 785.716 kb on + strand at 785.717 kb on - strand at 785.727 kb on - strand at 785.740 kb on + strand at 785.764 kb on + strand at 785.764 kb on + strand at 785.765 kb on - strand at 785.765 kb on - strand at 785.765 kb on - strand at 785.789 kb on + strand at 785.813 kb on - strand at 785.834 kb on - strand at 785.837 kb on + strand at 785.837 kb on + strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.882 kb on - strand at 785.888 kb on - strand at 785.888 kb on - strand at 785.894 kb on + strand at 785.894 kb on + strand at 785.895 kb on - strand at 785.895 kb on - strand at 785.895 kb on - strand at 785.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 781,763 + -0.4 781,763 + +0.4 781,764 - -0.2 781,764 - +0.6 781,764 - +2.9 781,764 - +1.4 782,013 + EX28DRAFT_0784 0.30 +0.5 782,201 + EX28DRAFT_0784 0.51 +1.1 782,276 + EX28DRAFT_0784 0.60 +1.2 782,276 + EX28DRAFT_0784 0.60 -0.7 782,360 - EX28DRAFT_0784 0.69 +1.4 782,628 + +1.0 782,632 - +0.4 782,641 + +0.4 782,662 - +0.3 782,715 + +0.6 782,745 + +0.3 782,782 - -0.8 782,809 + -3.0 782,810 - -0.9 782,811 + +0.3 782,812 - -0.7 782,976 + EX28DRAFT_0785 0.14 -1.8 782,991 + EX28DRAFT_0785 0.14 -1.7 782,991 + EX28DRAFT_0785 0.14 -0.2 782,992 - EX28DRAFT_0785 0.15 +0.1 783,109 + EX28DRAFT_0785 0.20 -1.1 783,109 + EX28DRAFT_0785 0.20 -0.3 783,110 - EX28DRAFT_0785 0.20 +1.5 783,168 + EX28DRAFT_0785 0.22 -1.1 783,730 + EX28DRAFT_0785 0.47 +0.6 783,731 - EX28DRAFT_0785 0.47 +1.9 783,829 + EX28DRAFT_0785 0.51 -1.3 783,829 + EX28DRAFT_0785 0.51 -1.8 783,984 - EX28DRAFT_0785 0.58 +0.1 784,006 + EX28DRAFT_0785 0.59 -0.1 784,007 - EX28DRAFT_0785 0.59 -0.5 784,137 + EX28DRAFT_0785 0.65 +0.5 784,393 + EX28DRAFT_0785 0.76 +1.3 784,393 + EX28DRAFT_0785 0.76 -3.1 784,485 + EX28DRAFT_0785 0.80 +0.1 784,485 + EX28DRAFT_0785 0.80 -2.3 784,485 + EX28DRAFT_0785 0.80 +0.4 784,753 + +0.2 784,753 + -0.4 784,754 - +1.1 784,754 - +0.3 784,852 + +0.8 784,857 - +0.1 784,908 + -3.7 784,908 + -0.6 784,908 + -0.4 784,909 - -1.2 784,943 - -2.4 785,011 + -3.1 785,012 - +0.6 785,424 + +1.4 785,424 + -2.7 785,467 + +1.9 785,507 + +1.6 785,508 - -0.1 785,509 + +1.5 785,509 + -0.5 785,510 - -0.5 785,510 - -0.1 785,693 + -2.9 785,716 + +0.1 785,717 - -2.1 785,727 - +1.5 785,740 + -1.7 785,764 + -2.3 785,764 + +1.7 785,765 - -3.0 785,765 - -0.1 785,765 - +0.1 785,789 + +0.3 785,813 - +0.6 785,834 - +0.0 785,837 + +0.2 785,837 + -0.8 785,838 - +1.9 785,838 - +1.9 785,838 - +0.5 785,838 - -1.4 785,838 - +0.9 785,882 - -0.4 785,888 - -0.0 785,888 - +0.2 785,894 + +1.1 785,894 + -0.3 785,895 - -1.1 785,895 - +0.2 785,895 - +0.3 785,915 - +0.1
Or see this region's nucleotide sequence