Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0781 and EX28DRAFT_0782 are separated by 68 nucleotides EX28DRAFT_0782 and EX28DRAFT_0783 overlap by 8 nucleotides EX28DRAFT_0783 and EX28DRAFT_0784 overlap by 22 nucleotides
EX28DRAFT_0781: EX28DRAFT_0781 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 778,910 to 779,890
_0781
EX28DRAFT_0782: EX28DRAFT_0782 - Fatty acid desaturase, at 779,959 to 781,011
_0782
EX28DRAFT_0783: EX28DRAFT_0783 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 781,004 to 781,762
_0783
EX28DRAFT_0784: EX28DRAFT_0784 - Transcriptional regulator, at 781,741 to 782,637
_0784
Position (kb) 779
780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 778.993 kb on + strand at 778.994 kb on - strand at 778.994 kb on - strand at 779.304 kb on + strand, within EX28DRAFT_0781 at 779.304 kb on + strand, within EX28DRAFT_0781 at 779.305 kb on - strand, within EX28DRAFT_0781 at 779.305 kb on - strand, within EX28DRAFT_0781 at 779.428 kb on + strand, within EX28DRAFT_0781 at 779.428 kb on + strand, within EX28DRAFT_0781 at 779.429 kb on - strand, within EX28DRAFT_0781 at 779.430 kb on + strand, within EX28DRAFT_0781 at 779.430 kb on + strand, within EX28DRAFT_0781 at 779.431 kb on - strand, within EX28DRAFT_0781 at 779.431 kb on - strand, within EX28DRAFT_0781 at 779.560 kb on + strand, within EX28DRAFT_0781 at 779.653 kb on + strand, within EX28DRAFT_0781 at 779.698 kb on - strand, within EX28DRAFT_0781 at 779.903 kb on - strand at 779.916 kb on - strand at 779.916 kb on - strand at 779.980 kb on - strand at 780.012 kb on + strand at 780.013 kb on - strand at 780.013 kb on - strand at 780.147 kb on + strand, within EX28DRAFT_0782 at 780.153 kb on + strand, within EX28DRAFT_0782 at 780.153 kb on + strand, within EX28DRAFT_0782 at 780.157 kb on + strand, within EX28DRAFT_0782 at 780.157 kb on + strand, within EX28DRAFT_0782 at 780.157 kb on + strand, within EX28DRAFT_0782 at 780.157 kb on + strand, within EX28DRAFT_0782 at 780.158 kb on - strand, within EX28DRAFT_0782 at 780.158 kb on - strand, within EX28DRAFT_0782 at 780.244 kb on + strand, within EX28DRAFT_0782 at 780.245 kb on - strand, within EX28DRAFT_0782 at 780.245 kb on - strand, within EX28DRAFT_0782 at 780.245 kb on - strand, within EX28DRAFT_0782 at 780.425 kb on - strand, within EX28DRAFT_0782 at 780.425 kb on - strand, within EX28DRAFT_0782 at 780.425 kb on - strand, within EX28DRAFT_0782 at 780.765 kb on + strand, within EX28DRAFT_0782 at 780.811 kb on + strand, within EX28DRAFT_0782 at 780.811 kb on + strand, within EX28DRAFT_0782 at 780.812 kb on - strand, within EX28DRAFT_0782 at 780.812 kb on - strand, within EX28DRAFT_0782 at 780.868 kb on + strand, within EX28DRAFT_0782 at 780.932 kb on + strand at 781.031 kb on + strand at 781.032 kb on - strand at 781.032 kb on - strand at 781.032 kb on - strand at 781.032 kb on - strand at 781.242 kb on - strand, within EX28DRAFT_0783 at 781.242 kb on - strand, within EX28DRAFT_0783 at 781.348 kb on + strand, within EX28DRAFT_0783 at 781.349 kb on - strand, within EX28DRAFT_0783 at 781.763 kb on + strand at 781.763 kb on + strand at 781.764 kb on - strand at 781.764 kb on - strand at 781.764 kb on - strand at 781.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 778,993 + +1.7 778,994 - +1.3 778,994 - -1.3 779,304 + EX28DRAFT_0781 0.40 +0.6 779,304 + EX28DRAFT_0781 0.40 -0.2 779,305 - EX28DRAFT_0781 0.40 -0.6 779,305 - EX28DRAFT_0781 0.40 -1.2 779,428 + EX28DRAFT_0781 0.53 -0.5 779,428 + EX28DRAFT_0781 0.53 -0.2 779,429 - EX28DRAFT_0781 0.53 +0.3 779,430 + EX28DRAFT_0781 0.53 +0.4 779,430 + EX28DRAFT_0781 0.53 +0.8 779,431 - EX28DRAFT_0781 0.53 -0.6 779,431 - EX28DRAFT_0781 0.53 -0.7 779,560 + EX28DRAFT_0781 0.66 +0.4 779,653 + EX28DRAFT_0781 0.76 +2.6 779,698 - EX28DRAFT_0781 0.80 +0.2 779,903 - +0.7 779,916 - +0.1 779,916 - +0.2 779,980 - +3.0 780,012 + -0.6 780,013 - +0.1 780,013 - -0.6 780,147 + EX28DRAFT_0782 0.18 +1.2 780,153 + EX28DRAFT_0782 0.18 -0.9 780,153 + EX28DRAFT_0782 0.18 -0.7 780,157 + EX28DRAFT_0782 0.19 -0.3 780,157 + EX28DRAFT_0782 0.19 -0.8 780,157 + EX28DRAFT_0782 0.19 +1.1 780,157 + EX28DRAFT_0782 0.19 -0.5 780,158 - EX28DRAFT_0782 0.19 -2.4 780,158 - EX28DRAFT_0782 0.19 -0.5 780,244 + EX28DRAFT_0782 0.27 -1.2 780,245 - EX28DRAFT_0782 0.27 +2.6 780,245 - EX28DRAFT_0782 0.27 +1.9 780,245 - EX28DRAFT_0782 0.27 -1.9 780,425 - EX28DRAFT_0782 0.44 +3.4 780,425 - EX28DRAFT_0782 0.44 +1.9 780,425 - EX28DRAFT_0782 0.44 -0.5 780,765 + EX28DRAFT_0782 0.77 -3.2 780,811 + EX28DRAFT_0782 0.81 -0.3 780,811 + EX28DRAFT_0782 0.81 -0.9 780,812 - EX28DRAFT_0782 0.81 -0.0 780,812 - EX28DRAFT_0782 0.81 +0.3 780,868 + EX28DRAFT_0782 0.86 -2.5 780,932 + +4.3 781,031 + +1.3 781,032 - +0.8 781,032 - +1.6 781,032 - -1.0 781,032 - +0.9 781,242 - EX28DRAFT_0783 0.31 -0.4 781,242 - EX28DRAFT_0783 0.31 +0.9 781,348 + EX28DRAFT_0783 0.45 -0.7 781,349 - EX28DRAFT_0783 0.45 +3.4 781,763 + -0.4 781,763 + +0.4 781,764 - -0.2 781,764 - +0.6 781,764 - +2.9 781,764 - +1.4
Or see this region's nucleotide sequence