Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0723 and EX28DRAFT_0724 are separated by 132 nucleotides EX28DRAFT_0724 and EX28DRAFT_0725 are separated by 96 nucleotides EX28DRAFT_0725 and EX28DRAFT_0726 are separated by 19 nucleotides
EX28DRAFT_0723: EX28DRAFT_0723 - integral membrane protein, PqiA family, at 721,457 to 722,740
_0723
EX28DRAFT_0724: EX28DRAFT_0724 - GAF domain-containing protein, at 722,873 to 723,370
_0724
EX28DRAFT_0725: EX28DRAFT_0725 - Activator of osmoprotectant transporter ProP, at 723,467 to 724,153
_0725
EX28DRAFT_0726: EX28DRAFT_0726 - C-terminal peptidase (prc), at 724,173 to 726,221
_0726
Position (kb) 723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 722.467 kb on - strand, within EX28DRAFT_0723 at 722.473 kb on + strand, within EX28DRAFT_0723 at 722.473 kb on + strand, within EX28DRAFT_0723 at 722.474 kb on - strand, within EX28DRAFT_0723 at 722.626 kb on + strand at 722.627 kb on - strand at 722.689 kb on + strand at 722.699 kb on + strand at 722.756 kb on - strand at 722.756 kb on - strand at 722.759 kb on + strand at 722.759 kb on + strand at 722.772 kb on + strand at 722.777 kb on + strand at 722.823 kb on - strand at 722.859 kb on + strand at 723.268 kb on + strand, within EX28DRAFT_0724 at 723.321 kb on + strand at 723.369 kb on - strand at 723.384 kb on + strand at 723.384 kb on + strand at 723.406 kb on + strand at 723.407 kb on - strand at 723.408 kb on + strand at 723.452 kb on + strand at 723.452 kb on + strand at 723.481 kb on + strand at 723.658 kb on + strand, within EX28DRAFT_0725 at 723.681 kb on - strand, within EX28DRAFT_0725 at 723.880 kb on + strand, within EX28DRAFT_0725 at 724.054 kb on + strand, within EX28DRAFT_0725 at 724.583 kb on + strand, within EX28DRAFT_0726
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 722,467 - EX28DRAFT_0723 0.79 +0.6 722,473 + EX28DRAFT_0723 0.79 -0.2 722,473 + EX28DRAFT_0723 0.79 -0.6 722,474 - EX28DRAFT_0723 0.79 +6.3 722,626 + -0.5 722,627 - +0.4 722,689 + +2.0 722,699 + +0.1 722,756 - -1.5 722,756 - +2.7 722,759 + +1.1 722,759 + -0.2 722,772 + +0.0 722,777 + -0.5 722,823 - -1.6 722,859 + -0.1 723,268 + EX28DRAFT_0724 0.79 +0.1 723,321 + +1.4 723,369 - -0.2 723,384 + +4.5 723,384 + +0.9 723,406 + -0.4 723,407 - -0.4 723,408 + +1.9 723,452 + +0.5 723,452 + -0.5 723,481 + -2.1 723,658 + EX28DRAFT_0725 0.28 -0.2 723,681 - EX28DRAFT_0725 0.31 -2.4 723,880 + EX28DRAFT_0725 0.60 +1.9 724,054 + EX28DRAFT_0725 0.85 -1.4 724,583 + EX28DRAFT_0726 0.20 -3.3
Or see this region's nucleotide sequence