Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0705 and EX28DRAFT_0706 are separated by 39 nucleotides EX28DRAFT_0706 and EX28DRAFT_0707 are separated by 42 nucleotides
EX28DRAFT_0705: EX28DRAFT_0705 - 6-phosphogluconate dehydratase (EC 4.2.1.12), at 703,606 to 705,417
_0705
EX28DRAFT_0706: EX28DRAFT_0706 - Entner-Doudoroff aldolase, at 705,457 to 706,098
_0706
EX28DRAFT_0707: EX28DRAFT_0707 - formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-), at 706,141 to 707,319
_0707
Position (kb) 705
706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 704.560 kb on - strand, within EX28DRAFT_0705 at 704.591 kb on + strand, within EX28DRAFT_0705 at 704.975 kb on + strand, within EX28DRAFT_0705 at 704.975 kb on + strand, within EX28DRAFT_0705 at 704.975 kb on + strand, within EX28DRAFT_0705 at 704.976 kb on - strand, within EX28DRAFT_0705 at 704.976 kb on - strand, within EX28DRAFT_0705 at 705.043 kb on - strand, within EX28DRAFT_0705 at 705.065 kb on + strand, within EX28DRAFT_0705 at 705.066 kb on - strand, within EX28DRAFT_0705 at 705.070 kb on - strand, within EX28DRAFT_0705 at 705.075 kb on + strand, within EX28DRAFT_0705 at 705.075 kb on + strand, within EX28DRAFT_0705 at 705.076 kb on - strand, within EX28DRAFT_0705 at 705.194 kb on - strand, within EX28DRAFT_0705 at 705.263 kb on + strand at 705.264 kb on - strand at 705.310 kb on - strand at 705.405 kb on + strand at 705.406 kb on - strand at 705.408 kb on + strand at 705.415 kb on + strand at 705.431 kb on + strand at 705.431 kb on + strand at 705.545 kb on + strand, within EX28DRAFT_0706 at 705.923 kb on + strand, within EX28DRAFT_0706 at 705.962 kb on - strand, within EX28DRAFT_0706 at 706.097 kb on - strand at 706.270 kb on + strand, within EX28DRAFT_0707 at 706.270 kb on + strand, within EX28DRAFT_0707 at 706.409 kb on - strand, within EX28DRAFT_0707 at 706.818 kb on + strand, within EX28DRAFT_0707 at 706.819 kb on - strand, within EX28DRAFT_0707
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 704,560 - EX28DRAFT_0705 0.53 -0.2 704,591 + EX28DRAFT_0705 0.54 +0.4 704,975 + EX28DRAFT_0705 0.76 +0.5 704,975 + EX28DRAFT_0705 0.76 +0.8 704,975 + EX28DRAFT_0705 0.76 +0.1 704,976 - EX28DRAFT_0705 0.76 +0.4 704,976 - EX28DRAFT_0705 0.76 +0.2 705,043 - EX28DRAFT_0705 0.79 -0.2 705,065 + EX28DRAFT_0705 0.81 +0.5 705,066 - EX28DRAFT_0705 0.81 -0.4 705,070 - EX28DRAFT_0705 0.81 -1.4 705,075 + EX28DRAFT_0705 0.81 +0.4 705,075 + EX28DRAFT_0705 0.81 +0.9 705,076 - EX28DRAFT_0705 0.81 -1.0 705,194 - EX28DRAFT_0705 0.88 -0.9 705,263 + +0.4 705,264 - -0.7 705,310 - +0.6 705,405 + +3.8 705,406 - -2.1 705,408 + +0.1 705,415 + -0.4 705,431 + -3.2 705,431 + +1.5 705,545 + EX28DRAFT_0706 0.14 -1.8 705,923 + EX28DRAFT_0706 0.73 -3.0 705,962 - EX28DRAFT_0706 0.79 -0.6 706,097 - +1.4 706,270 + EX28DRAFT_0707 0.11 +3.0 706,270 + EX28DRAFT_0707 0.11 -0.9 706,409 - EX28DRAFT_0707 0.23 +1.0 706,818 + EX28DRAFT_0707 0.57 +0.0 706,819 - EX28DRAFT_0707 0.58 +1.0
Or see this region's nucleotide sequence