Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0691 and EX28DRAFT_0692 are separated by 1 nucleotides EX28DRAFT_0692 and EX28DRAFT_0693 are separated by 27 nucleotides EX28DRAFT_0693 and EX28DRAFT_0694 are separated by 34 nucleotides EX28DRAFT_0694 and EX28DRAFT_0695 are separated by 80 nucleotides
EX28DRAFT_0691: EX28DRAFT_0691 - aspartyl-tRNA synthetase, bacterial type, at 688,741 to 690,513
_0691
EX28DRAFT_0692: EX28DRAFT_0692 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 690,515 to 690,958
_0692
EX28DRAFT_0693: EX28DRAFT_0693 - DNA-binding regulatory protein, YebC/PmpR family, at 690,986 to 691,726
_0693
EX28DRAFT_0694: EX28DRAFT_0694 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 691,761 to 692,282
_0694
EX28DRAFT_0695: EX28DRAFT_0695 - Holliday junction DNA helicase subunit RuvA, at 692,363 to 692,977
_0695
Position (kb) 690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 690.523 kb on + strand at 690.997 kb on + strand at 690.997 kb on + strand at 690.997 kb on + strand at 691.000 kb on + strand at 691.000 kb on + strand at 691.121 kb on - strand, within EX28DRAFT_0693 at 691.244 kb on + strand, within EX28DRAFT_0693 at 691.682 kb on + strand at 691.737 kb on + strand at 692.322 kb on + strand at 692.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 690,523 + -1.0 690,997 + +0.2 690,997 + +2.5 690,997 + +0.0 691,000 + -1.7 691,000 + -2.4 691,121 - EX28DRAFT_0693 0.18 -3.5 691,244 + EX28DRAFT_0693 0.35 -0.9 691,682 + +0.0 691,737 + -0.6 692,322 + +1.0 692,334 + +1.0
Or see this region's nucleotide sequence