Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0680

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0679 and EX28DRAFT_0680 are separated by 508 nucleotidesEX28DRAFT_0680 and EX28DRAFT_0681 overlap by 8 nucleotides EX28DRAFT_0679: EX28DRAFT_0679 - P pilus assembly protein, pilin FimA, at 676,598 to 677,173 _0679 EX28DRAFT_0680: EX28DRAFT_0680 - flagellar biosynthetic protein FlhB, at 677,682 to 678,830 _0680 EX28DRAFT_0681: EX28DRAFT_0681 - flagellar biosynthesis protein FlhA, at 678,823 to 680,901 _0681 Position (kb) 677 678 679Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 676.729 kb on - strand, within EX28DRAFT_0679at 676.729 kb on - strand, within EX28DRAFT_0679at 676.765 kb on + strand, within EX28DRAFT_0679at 676.855 kb on + strand, within EX28DRAFT_0679at 676.957 kb on + strand, within EX28DRAFT_0679at 676.957 kb on + strand, within EX28DRAFT_0679at 676.958 kb on - strand, within EX28DRAFT_0679at 676.996 kb on + strand, within EX28DRAFT_0679at 676.996 kb on + strand, within EX28DRAFT_0679at 677.002 kb on - strand, within EX28DRAFT_0679at 677.021 kb on - strand, within EX28DRAFT_0679at 677.540 kb on + strandat 677.540 kb on + strandat 677.541 kb on - strandat 677.541 kb on - strandat 677.607 kb on - strandat 677.662 kb on + strandat 677.776 kb on + strandat 677.800 kb on + strand, within EX28DRAFT_0680at 677.813 kb on + strand, within EX28DRAFT_0680at 677.813 kb on + strand, within EX28DRAFT_0680at 677.813 kb on + strand, within EX28DRAFT_0680at 677.814 kb on - strand, within EX28DRAFT_0680at 677.925 kb on - strand, within EX28DRAFT_0680at 677.925 kb on - strand, within EX28DRAFT_0680at 677.933 kb on + strand, within EX28DRAFT_0680at 677.934 kb on - strand, within EX28DRAFT_0680at 677.934 kb on - strand, within EX28DRAFT_0680at 678.165 kb on + strand, within EX28DRAFT_0680at 678.166 kb on - strand, within EX28DRAFT_0680at 678.166 kb on - strand, within EX28DRAFT_0680at 678.175 kb on - strand, within EX28DRAFT_0680at 678.201 kb on - strand, within EX28DRAFT_0680at 678.318 kb on + strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.319 kb on - strand, within EX28DRAFT_0680at 678.320 kb on + strand, within EX28DRAFT_0680at 678.321 kb on - strand, within EX28DRAFT_0680at 678.369 kb on + strand, within EX28DRAFT_0680at 678.370 kb on - strand, within EX28DRAFT_0680at 678.371 kb on + strand, within EX28DRAFT_0680at 678.371 kb on + strand, within EX28DRAFT_0680at 678.371 kb on + strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.372 kb on - strand, within EX28DRAFT_0680at 678.398 kb on - strand, within EX28DRAFT_0680at 678.495 kb on + strand, within EX28DRAFT_0680at 678.496 kb on - strand, within EX28DRAFT_0680at 678.688 kb on - strand, within EX28DRAFT_0680at 678.911 kb on + strandat 678.912 kb on - strandat 678.976 kb on - strandat 678.976 kb on - strandat 679.062 kb on + strand, within EX28DRAFT_0681at 679.104 kb on + strand, within EX28DRAFT_0681at 679.147 kb on - strand, within EX28DRAFT_0681at 679.236 kb on + strand, within EX28DRAFT_0681at 679.237 kb on - strand, within EX28DRAFT_0681at 679.237 kb on - strand, within EX28DRAFT_0681at 679.243 kb on - strand, within EX28DRAFT_0681at 679.347 kb on + strand, within EX28DRAFT_0681at 679.347 kb on + strand, within EX28DRAFT_0681at 679.348 kb on - strand, within EX28DRAFT_0681at 679.406 kb on - strand, within EX28DRAFT_0681at 679.406 kb on - strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.508 kb on + strand, within EX28DRAFT_0681at 679.509 kb on - strand, within EX28DRAFT_0681at 679.509 kb on - strand, within EX28DRAFT_0681at 679.546 kb on + strand, within EX28DRAFT_0681at 679.548 kb on + strand, within EX28DRAFT_0681at 679.771 kb on - strand, within EX28DRAFT_0681

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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676,729 - EX28DRAFT_0679 0.23 +1.9
676,729 - EX28DRAFT_0679 0.23 +0.9
676,765 + EX28DRAFT_0679 0.29 -0.4
676,855 + EX28DRAFT_0679 0.45 +0.1
676,957 + EX28DRAFT_0679 0.62 +0.4
676,957 + EX28DRAFT_0679 0.62 -2.1
676,958 - EX28DRAFT_0679 0.62 -1.2
676,996 + EX28DRAFT_0679 0.69 -1.5
676,996 + EX28DRAFT_0679 0.69 -1.3
677,002 - EX28DRAFT_0679 0.70 +1.9
677,021 - EX28DRAFT_0679 0.73 +3.9
677,540 + -1.0
677,540 + -0.2
677,541 - -1.4
677,541 - -0.8
677,607 - -0.5
677,662 + +0.7
677,776 + -0.5
677,800 + EX28DRAFT_0680 0.10 -4.3
677,813 + EX28DRAFT_0680 0.11 -0.6
677,813 + EX28DRAFT_0680 0.11 -0.5
677,813 + EX28DRAFT_0680 0.11 -0.9
677,814 - EX28DRAFT_0680 0.11 -1.5
677,925 - EX28DRAFT_0680 0.21 -1.4
677,925 - EX28DRAFT_0680 0.21 -0.9
677,933 + EX28DRAFT_0680 0.22 +0.6
677,934 - EX28DRAFT_0680 0.22 -0.8
677,934 - EX28DRAFT_0680 0.22 -1.9
678,165 + EX28DRAFT_0680 0.42 +0.2
678,166 - EX28DRAFT_0680 0.42 -0.7
678,166 - EX28DRAFT_0680 0.42 +1.0
678,175 - EX28DRAFT_0680 0.43 -0.0
678,201 - EX28DRAFT_0680 0.45 +1.2
678,318 + EX28DRAFT_0680 0.55 -2.0
678,319 - EX28DRAFT_0680 0.55 -2.6
678,319 - EX28DRAFT_0680 0.55 -3.8
678,319 - EX28DRAFT_0680 0.55 -2.7
678,319 - EX28DRAFT_0680 0.55 -1.0
678,320 + EX28DRAFT_0680 0.56 -0.3
678,321 - EX28DRAFT_0680 0.56 -2.3
678,369 + EX28DRAFT_0680 0.60 +1.2
678,370 - EX28DRAFT_0680 0.60 +0.2
678,371 + EX28DRAFT_0680 0.60 -0.0
678,371 + EX28DRAFT_0680 0.60 -0.6
678,371 + EX28DRAFT_0680 0.60 -0.9
678,372 - EX28DRAFT_0680 0.60 -0.3
678,372 - EX28DRAFT_0680 0.60 -0.9
678,372 - EX28DRAFT_0680 0.60 +0.4
678,372 - EX28DRAFT_0680 0.60 +0.5
678,398 - EX28DRAFT_0680 0.62 +0.0
678,495 + EX28DRAFT_0680 0.71 -0.2
678,496 - EX28DRAFT_0680 0.71 +1.3
678,688 - EX28DRAFT_0680 0.88 +1.1
678,911 + -3.4
678,912 - -0.3
678,976 - -0.2
678,976 - -0.1
679,062 + EX28DRAFT_0681 0.11 -0.5
679,104 + EX28DRAFT_0681 0.14 -1.9
679,147 - EX28DRAFT_0681 0.16 -1.8
679,236 + EX28DRAFT_0681 0.20 -0.7
679,237 - EX28DRAFT_0681 0.20 -0.6
679,237 - EX28DRAFT_0681 0.20 +0.1
679,243 - EX28DRAFT_0681 0.20 -2.2
679,347 + EX28DRAFT_0681 0.25 +0.5
679,347 + EX28DRAFT_0681 0.25 -1.0
679,348 - EX28DRAFT_0681 0.25 -1.4
679,406 - EX28DRAFT_0681 0.28 -1.1
679,406 - EX28DRAFT_0681 0.28 -0.9
679,508 + EX28DRAFT_0681 0.33 -0.7
679,508 + EX28DRAFT_0681 0.33 -2.6
679,508 + EX28DRAFT_0681 0.33 -0.7
679,508 + EX28DRAFT_0681 0.33 -0.3
679,508 + EX28DRAFT_0681 0.33 +0.1
679,509 - EX28DRAFT_0681 0.33 -4.1
679,509 - EX28DRAFT_0681 0.33 -0.5
679,546 + EX28DRAFT_0681 0.35 -1.8
679,548 + EX28DRAFT_0681 0.35 -2.3
679,771 - EX28DRAFT_0681 0.46 +0.0

Or see this region's nucleotide sequence