Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0677

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0676 and EX28DRAFT_0677 are separated by 4 nucleotidesEX28DRAFT_0677 and EX28DRAFT_0678 are separated by 93 nucleotidesEX28DRAFT_0678 and EX28DRAFT_0679 are separated by 135 nucleotides EX28DRAFT_0676: EX28DRAFT_0676 - P pilus assembly protein, pilin FimA, at 672,049 to 673,215 _0676 EX28DRAFT_0677: EX28DRAFT_0677 - P pilus assembly protein, porin PapC, at 673,220 to 675,676 _0677 EX28DRAFT_0678: EX28DRAFT_0678 - P pilus assembly protein, chaperone PapD, at 675,770 to 676,462 _0678 EX28DRAFT_0679: EX28DRAFT_0679 - P pilus assembly protein, pilin FimA, at 676,598 to 677,173 _0679 Position (kb) 673 674 675 676Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 672.224 kb on + strand, within EX28DRAFT_0676at 672.225 kb on - strand, within EX28DRAFT_0676at 672.225 kb on - strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.227 kb on - strand, within EX28DRAFT_0676at 672.269 kb on + strand, within EX28DRAFT_0676at 672.269 kb on + strand, within EX28DRAFT_0676at 672.270 kb on - strand, within EX28DRAFT_0676at 672.345 kb on + strand, within EX28DRAFT_0676at 672.366 kb on + strand, within EX28DRAFT_0676at 672.366 kb on + strand, within EX28DRAFT_0676at 672.672 kb on + strand, within EX28DRAFT_0676at 672.679 kb on + strand, within EX28DRAFT_0676at 672.679 kb on + strand, within EX28DRAFT_0676at 672.680 kb on - strand, within EX28DRAFT_0676at 672.771 kb on + strand, within EX28DRAFT_0676at 672.771 kb on + strand, within EX28DRAFT_0676at 672.774 kb on + strand, within EX28DRAFT_0676at 672.774 kb on + strand, within EX28DRAFT_0676at 672.852 kb on - strand, within EX28DRAFT_0676at 672.941 kb on + strand, within EX28DRAFT_0676at 672.961 kb on + strand, within EX28DRAFT_0676at 672.963 kb on + strand, within EX28DRAFT_0676at 673.031 kb on + strand, within EX28DRAFT_0676at 673.031 kb on + strand, within EX28DRAFT_0676at 673.032 kb on - strand, within EX28DRAFT_0676at 673.089 kb on - strand, within EX28DRAFT_0676at 673.113 kb on + strandat 673.121 kb on - strandat 673.205 kb on - strandat 673.205 kb on - strandat 673.206 kb on + strandat 673.207 kb on - strandat 673.221 kb on + strandat 673.221 kb on + strandat 673.221 kb on + strandat 673.222 kb on - strandat 673.375 kb on - strandat 673.475 kb on - strand, within EX28DRAFT_0677at 673.604 kb on - strand, within EX28DRAFT_0677at 673.791 kb on + strand, within EX28DRAFT_0677at 673.811 kb on - strand, within EX28DRAFT_0677at 673.824 kb on + strand, within EX28DRAFT_0677at 673.824 kb on + strand, within EX28DRAFT_0677at 673.827 kb on + strand, within EX28DRAFT_0677at 673.848 kb on + strand, within EX28DRAFT_0677at 673.923 kb on + strand, within EX28DRAFT_0677at 673.924 kb on - strand, within EX28DRAFT_0677at 673.980 kb on + strand, within EX28DRAFT_0677at 673.980 kb on + strand, within EX28DRAFT_0677at 674.007 kb on + strand, within EX28DRAFT_0677at 674.007 kb on + strand, within EX28DRAFT_0677at 674.008 kb on - strand, within EX28DRAFT_0677at 674.011 kb on + strand, within EX28DRAFT_0677at 674.011 kb on + strand, within EX28DRAFT_0677at 674.012 kb on - strand, within EX28DRAFT_0677at 674.012 kb on - strand, within EX28DRAFT_0677at 674.012 kb on - strand, within EX28DRAFT_0677at 674.058 kb on - strand, within EX28DRAFT_0677at 674.100 kb on + strand, within EX28DRAFT_0677at 674.100 kb on + strand, within EX28DRAFT_0677at 674.101 kb on - strand, within EX28DRAFT_0677at 674.101 kb on - strand, within EX28DRAFT_0677at 674.105 kb on - strand, within EX28DRAFT_0677at 674.105 kb on - strand, within EX28DRAFT_0677at 674.119 kb on - strand, within EX28DRAFT_0677at 674.140 kb on + strand, within EX28DRAFT_0677at 674.145 kb on - strand, within EX28DRAFT_0677at 674.212 kb on - strand, within EX28DRAFT_0677at 674.212 kb on - strand, within EX28DRAFT_0677at 674.331 kb on + strand, within EX28DRAFT_0677at 674.378 kb on - strand, within EX28DRAFT_0677at 674.404 kb on - strand, within EX28DRAFT_0677at 674.404 kb on - strand, within EX28DRAFT_0677at 674.532 kb on + strand, within EX28DRAFT_0677at 674.532 kb on + strand, within EX28DRAFT_0677at 674.533 kb on - strand, within EX28DRAFT_0677at 674.586 kb on + strand, within EX28DRAFT_0677at 674.667 kb on + strand, within EX28DRAFT_0677at 674.693 kb on - strand, within EX28DRAFT_0677at 674.710 kb on - strand, within EX28DRAFT_0677at 674.788 kb on - strand, within EX28DRAFT_0677at 674.833 kb on - strand, within EX28DRAFT_0677at 674.961 kb on + strand, within EX28DRAFT_0677at 674.966 kb on + strand, within EX28DRAFT_0677at 674.966 kb on + strand, within EX28DRAFT_0677at 674.967 kb on - strand, within EX28DRAFT_0677at 674.971 kb on + strand, within EX28DRAFT_0677at 674.978 kb on + strand, within EX28DRAFT_0677at 674.978 kb on + strand, within EX28DRAFT_0677at 674.979 kb on - strand, within EX28DRAFT_0677at 675.052 kb on + strand, within EX28DRAFT_0677at 675.102 kb on + strand, within EX28DRAFT_0677at 675.154 kb on - strand, within EX28DRAFT_0677at 675.154 kb on - strand, within EX28DRAFT_0677at 675.211 kb on - strand, within EX28DRAFT_0677at 675.261 kb on + strand, within EX28DRAFT_0677at 675.261 kb on + strand, within EX28DRAFT_0677at 675.281 kb on + strand, within EX28DRAFT_0677at 675.298 kb on + strand, within EX28DRAFT_0677at 675.298 kb on + strand, within EX28DRAFT_0677at 675.354 kb on + strand, within EX28DRAFT_0677at 675.354 kb on + strand, within EX28DRAFT_0677at 675.354 kb on + strand, within EX28DRAFT_0677at 675.354 kb on + strand, within EX28DRAFT_0677at 675.355 kb on - strand, within EX28DRAFT_0677at 675.355 kb on - strand, within EX28DRAFT_0677at 675.355 kb on - strand, within EX28DRAFT_0677at 675.355 kb on - strand, within EX28DRAFT_0677at 675.355 kb on - strand, within EX28DRAFT_0677at 675.355 kb on - strand, within EX28DRAFT_0677at 675.464 kb on + strandat 675.546 kb on + strandat 675.546 kb on + strandat 675.546 kb on + strandat 675.546 kb on + strandat 675.547 kb on - strandat 675.547 kb on - strandat 675.746 kb on - strandat 675.795 kb on + strandat 675.901 kb on + strand, within EX28DRAFT_0678at 675.955 kb on - strand, within EX28DRAFT_0678at 676.147 kb on + strand, within EX28DRAFT_0678at 676.149 kb on + strand, within EX28DRAFT_0678at 676.150 kb on - strand, within EX28DRAFT_0678at 676.150 kb on - strand, within EX28DRAFT_0678at 676.298 kb on + strand, within EX28DRAFT_0678at 676.366 kb on - strand, within EX28DRAFT_0678

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
672,224 + EX28DRAFT_0676 0.15 +0.3
672,225 - EX28DRAFT_0676 0.15 +1.1
672,225 - EX28DRAFT_0676 0.15 +1.3
672,226 + EX28DRAFT_0676 0.15 -0.2
672,226 + EX28DRAFT_0676 0.15 -1.3
672,226 + EX28DRAFT_0676 0.15 -1.1
672,226 + EX28DRAFT_0676 0.15 -1.1
672,227 - EX28DRAFT_0676 0.15 -3.1
672,269 + EX28DRAFT_0676 0.19 -1.1
672,269 + EX28DRAFT_0676 0.19 +1.2
672,270 - EX28DRAFT_0676 0.19 -0.3
672,345 + EX28DRAFT_0676 0.25 -3.9
672,366 + EX28DRAFT_0676 0.27 +0.1
672,366 + EX28DRAFT_0676 0.27 +0.1
672,672 + EX28DRAFT_0676 0.53 -1.9
672,679 + EX28DRAFT_0676 0.54 +2.2
672,679 + EX28DRAFT_0676 0.54 +1.1
672,680 - EX28DRAFT_0676 0.54 -2.1
672,771 + EX28DRAFT_0676 0.62 +1.5
672,771 + EX28DRAFT_0676 0.62 +1.6
672,774 + EX28DRAFT_0676 0.62 +1.4
672,774 + EX28DRAFT_0676 0.62 +1.9
672,852 - EX28DRAFT_0676 0.69 +0.8
672,941 + EX28DRAFT_0676 0.76 +1.1
672,961 + EX28DRAFT_0676 0.78 -0.1
672,963 + EX28DRAFT_0676 0.78 -2.0
673,031 + EX28DRAFT_0676 0.84 +1.9
673,031 + EX28DRAFT_0676 0.84 -0.7
673,032 - EX28DRAFT_0676 0.84 -2.3
673,089 - EX28DRAFT_0676 0.89 +0.9
673,113 + -3.1
673,121 - -1.1
673,205 - +0.1
673,205 - -0.9
673,206 + -0.0
673,207 - +0.4
673,221 + +1.9
673,221 + -0.7
673,221 + -0.3
673,222 - -0.7
673,375 - -2.8
673,475 - EX28DRAFT_0677 0.10 +0.8
673,604 - EX28DRAFT_0677 0.16 -0.8
673,791 + EX28DRAFT_0677 0.23 +1.1
673,811 - EX28DRAFT_0677 0.24 -1.7
673,824 + EX28DRAFT_0677 0.25 -0.9
673,824 + EX28DRAFT_0677 0.25 -0.2
673,827 + EX28DRAFT_0677 0.25 -0.9
673,848 + EX28DRAFT_0677 0.26 -1.6
673,923 + EX28DRAFT_0677 0.29 +0.2
673,924 - EX28DRAFT_0677 0.29 +1.3
673,980 + EX28DRAFT_0677 0.31 +0.9
673,980 + EX28DRAFT_0677 0.31 +0.2
674,007 + EX28DRAFT_0677 0.32 +1.1
674,007 + EX28DRAFT_0677 0.32 +0.5
674,008 - EX28DRAFT_0677 0.32 +0.1
674,011 + EX28DRAFT_0677 0.32 +0.5
674,011 + EX28DRAFT_0677 0.32 -2.0
674,012 - EX28DRAFT_0677 0.32 +1.7
674,012 - EX28DRAFT_0677 0.32 +0.7
674,012 - EX28DRAFT_0677 0.32 -2.1
674,058 - EX28DRAFT_0677 0.34 +0.3
674,100 + EX28DRAFT_0677 0.36 +1.8
674,100 + EX28DRAFT_0677 0.36 -2.7
674,101 - EX28DRAFT_0677 0.36 -0.8
674,101 - EX28DRAFT_0677 0.36 +0.4
674,105 - EX28DRAFT_0677 0.36 +0.5
674,105 - EX28DRAFT_0677 0.36 -1.6
674,119 - EX28DRAFT_0677 0.37 +2.0
674,140 + EX28DRAFT_0677 0.37 +0.8
674,145 - EX28DRAFT_0677 0.38 +1.3
674,212 - EX28DRAFT_0677 0.40 +0.2
674,212 - EX28DRAFT_0677 0.40 +1.9
674,331 + EX28DRAFT_0677 0.45 +0.4
674,378 - EX28DRAFT_0677 0.47 -1.4
674,404 - EX28DRAFT_0677 0.48 -2.6
674,404 - EX28DRAFT_0677 0.48 -0.3
674,532 + EX28DRAFT_0677 0.53 +0.4
674,532 + EX28DRAFT_0677 0.53 -0.4
674,533 - EX28DRAFT_0677 0.53 -0.9
674,586 + EX28DRAFT_0677 0.56 -0.0
674,667 + EX28DRAFT_0677 0.59 -1.6
674,693 - EX28DRAFT_0677 0.60 +0.2
674,710 - EX28DRAFT_0677 0.61 -1.5
674,788 - EX28DRAFT_0677 0.64 -0.6
674,833 - EX28DRAFT_0677 0.66 -1.4
674,961 + EX28DRAFT_0677 0.71 -0.2
674,966 + EX28DRAFT_0677 0.71 -0.9
674,966 + EX28DRAFT_0677 0.71 -0.6
674,967 - EX28DRAFT_0677 0.71 +1.1
674,971 + EX28DRAFT_0677 0.71 -0.4
674,978 + EX28DRAFT_0677 0.72 -1.6
674,978 + EX28DRAFT_0677 0.72 -0.4
674,979 - EX28DRAFT_0677 0.72 +1.2
675,052 + EX28DRAFT_0677 0.75 +3.1
675,102 + EX28DRAFT_0677 0.77 +0.6
675,154 - EX28DRAFT_0677 0.79 +0.7
675,154 - EX28DRAFT_0677 0.79 -3.2
675,211 - EX28DRAFT_0677 0.81 +1.1
675,261 + EX28DRAFT_0677 0.83 +1.9
675,261 + EX28DRAFT_0677 0.83 +0.9
675,281 + EX28DRAFT_0677 0.84 -0.9
675,298 + EX28DRAFT_0677 0.85 -1.3
675,298 + EX28DRAFT_0677 0.85 +0.0
675,354 + EX28DRAFT_0677 0.87 +0.2
675,354 + EX28DRAFT_0677 0.87 -0.8
675,354 + EX28DRAFT_0677 0.87 +2.4
675,354 + EX28DRAFT_0677 0.87 +0.1
675,355 - EX28DRAFT_0677 0.87 +1.0
675,355 - EX28DRAFT_0677 0.87 -1.8
675,355 - EX28DRAFT_0677 0.87 +0.0
675,355 - EX28DRAFT_0677 0.87 -0.8
675,355 - EX28DRAFT_0677 0.87 +0.8
675,355 - EX28DRAFT_0677 0.87 -0.6
675,464 + -0.1
675,546 + +0.7
675,546 + -0.2
675,546 + -1.2
675,546 + +0.4
675,547 - -0.4
675,547 - -1.7
675,746 - -0.7
675,795 + -0.4
675,901 + EX28DRAFT_0678 0.19 +0.5
675,955 - EX28DRAFT_0678 0.27 -0.6
676,147 + EX28DRAFT_0678 0.54 -1.3
676,149 + EX28DRAFT_0678 0.55 -4.3
676,150 - EX28DRAFT_0678 0.55 +1.1
676,150 - EX28DRAFT_0678 0.55 +2.5
676,298 + EX28DRAFT_0678 0.76 -0.7
676,366 - EX28DRAFT_0678 0.86 -1.9

Or see this region's nucleotide sequence