Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0671 and EX28DRAFT_0672 are separated by 19 nucleotides EX28DRAFT_0672 and EX28DRAFT_0673 overlap by 4 nucleotides EX28DRAFT_0673 and EX28DRAFT_0674 are separated by 17 nucleotides EX28DRAFT_0674 and EX28DRAFT_0675 are separated by 10 nucleotides
EX28DRAFT_0671: EX28DRAFT_0671 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 667,405 to 669,006
_0671
EX28DRAFT_0672: EX28DRAFT_0672 - Methylase of chemotaxis methyl-accepting proteins, at 669,026 to 669,892
_0672
EX28DRAFT_0673: EX28DRAFT_0673 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 669,889 to 670,938
_0673
EX28DRAFT_0674: EX28DRAFT_0674 - Response regulator receiver domain, at 670,956 to 671,345
_0674
EX28DRAFT_0675: EX28DRAFT_0675 - Chemotaxis protein, at 671,356 to 672,000
_0675
Position (kb) 669
670
671 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 668.937 kb on + strand at 668.963 kb on + strand at 668.963 kb on + strand at 669.010 kb on + strand at 669.011 kb on - strand at 669.011 kb on - strand at 669.014 kb on + strand at 669.015 kb on - strand at 669.015 kb on - strand at 669.025 kb on + strand at 669.115 kb on - strand, within EX28DRAFT_0672 at 669.160 kb on + strand, within EX28DRAFT_0672 at 669.160 kb on + strand, within EX28DRAFT_0672 at 669.176 kb on + strand, within EX28DRAFT_0672 at 669.177 kb on - strand, within EX28DRAFT_0672 at 669.281 kb on - strand, within EX28DRAFT_0672 at 669.374 kb on + strand, within EX28DRAFT_0672 at 669.619 kb on - strand, within EX28DRAFT_0672 at 669.677 kb on + strand, within EX28DRAFT_0672 at 669.677 kb on + strand, within EX28DRAFT_0672 at 669.796 kb on - strand, within EX28DRAFT_0672 at 669.866 kb on + strand at 669.867 kb on - strand at 669.867 kb on - strand at 669.867 kb on - strand at 670.303 kb on - strand, within EX28DRAFT_0673 at 670.409 kb on + strand, within EX28DRAFT_0673 at 670.409 kb on + strand, within EX28DRAFT_0673 at 670.409 kb on + strand, within EX28DRAFT_0673 at 670.410 kb on - strand, within EX28DRAFT_0673 at 670.410 kb on - strand, within EX28DRAFT_0673 at 670.458 kb on + strand, within EX28DRAFT_0673 at 670.459 kb on - strand, within EX28DRAFT_0673 at 670.564 kb on + strand, within EX28DRAFT_0673 at 670.564 kb on + strand, within EX28DRAFT_0673 at 670.564 kb on + strand, within EX28DRAFT_0673 at 670.564 kb on + strand, within EX28DRAFT_0673 at 670.564 kb on + strand, within EX28DRAFT_0673 at 670.565 kb on - strand, within EX28DRAFT_0673 at 670.565 kb on - strand, within EX28DRAFT_0673 at 670.565 kb on - strand, within EX28DRAFT_0673 at 670.611 kb on + strand, within EX28DRAFT_0673 at 670.886 kb on + strand at 670.887 kb on - strand at 670.928 kb on + strand at 670.929 kb on - strand at 670.932 kb on + strand at 670.932 kb on + strand at 670.932 kb on + strand at 670.933 kb on - strand at 670.933 kb on - strand at 670.933 kb on - strand at 670.933 kb on - strand at 671.117 kb on + strand, within EX28DRAFT_0674 at 671.139 kb on - strand, within EX28DRAFT_0674 at 671.271 kb on + strand, within EX28DRAFT_0674 at 671.524 kb on + strand, within EX28DRAFT_0675 at 671.525 kb on - strand, within EX28DRAFT_0675
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 668,937 + +1.2 668,963 + -1.8 668,963 + +1.2 669,010 + +0.3 669,011 - -0.6 669,011 - +0.3 669,014 + +0.3 669,015 - -0.7 669,015 - -2.0 669,025 + -0.5 669,115 - EX28DRAFT_0672 0.10 -2.4 669,160 + EX28DRAFT_0672 0.15 -0.6 669,160 + EX28DRAFT_0672 0.15 -0.5 669,176 + EX28DRAFT_0672 0.17 -0.1 669,177 - EX28DRAFT_0672 0.17 +1.2 669,281 - EX28DRAFT_0672 0.29 +0.1 669,374 + EX28DRAFT_0672 0.40 -2.5 669,619 - EX28DRAFT_0672 0.68 +0.9 669,677 + EX28DRAFT_0672 0.75 -0.8 669,677 + EX28DRAFT_0672 0.75 -1.0 669,796 - EX28DRAFT_0672 0.89 -0.9 669,866 + +0.7 669,867 - -2.9 669,867 - -0.1 669,867 - -0.6 670,303 - EX28DRAFT_0673 0.39 -1.1 670,409 + EX28DRAFT_0673 0.50 -0.4 670,409 + EX28DRAFT_0673 0.50 -1.9 670,409 + EX28DRAFT_0673 0.50 -1.1 670,410 - EX28DRAFT_0673 0.50 -0.2 670,410 - EX28DRAFT_0673 0.50 -3.1 670,458 + EX28DRAFT_0673 0.54 -3.2 670,459 - EX28DRAFT_0673 0.54 -0.4 670,564 + EX28DRAFT_0673 0.64 -0.1 670,564 + EX28DRAFT_0673 0.64 -2.2 670,564 + EX28DRAFT_0673 0.64 -1.2 670,564 + EX28DRAFT_0673 0.64 -1.8 670,564 + EX28DRAFT_0673 0.64 -1.7 670,565 - EX28DRAFT_0673 0.64 -4.0 670,565 - EX28DRAFT_0673 0.64 -0.8 670,565 - EX28DRAFT_0673 0.64 -0.9 670,611 + EX28DRAFT_0673 0.69 -1.5 670,886 + -2.4 670,887 - +1.9 670,928 + -1.2 670,929 - +0.1 670,932 + -1.8 670,932 + -0.8 670,932 + -0.9 670,933 - -1.3 670,933 - +0.3 670,933 - -2.8 670,933 - +0.9 671,117 + EX28DRAFT_0674 0.41 -0.3 671,139 - EX28DRAFT_0674 0.47 +0.6 671,271 + EX28DRAFT_0674 0.81 -1.2 671,524 + EX28DRAFT_0675 0.26 -0.2 671,525 - EX28DRAFT_0675 0.26 -1.7
Or see this region's nucleotide sequence