Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0662 and EX28DRAFT_0663 are separated by 19 nucleotides EX28DRAFT_0663 and EX28DRAFT_0664 are separated by 104 nucleotides EX28DRAFT_0664 and EX28DRAFT_0665 are separated by 429 nucleotides
EX28DRAFT_0662: EX28DRAFT_0662 - Chemotaxis protein histidine kinase and related kinases, at 656,025 to 658,061
_0662
EX28DRAFT_0663: EX28DRAFT_0663 - Chemotaxis signal transduction protein, at 658,081 to 658,584
_0663
EX28DRAFT_0664: EX28DRAFT_0664 - Na+/H+-dicarboxylate symporters, at 658,689 to 659,954
_0664
EX28DRAFT_0665: EX28DRAFT_0665 - Uncharacterized secreted protein, at 660,384 to 660,956
_0665
Position (kb) 658
659
660 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 657.913 kb on + strand at 657.914 kb on - strand at 657.914 kb on - strand at 658.048 kb on - strand at 658.048 kb on - strand at 658.063 kb on + strand at 658.064 kb on - strand at 658.075 kb on - strand at 658.077 kb on + strand at 658.243 kb on - strand, within EX28DRAFT_0663 at 658.324 kb on + strand, within EX28DRAFT_0663 at 658.325 kb on - strand, within EX28DRAFT_0663 at 658.577 kb on + strand at 658.578 kb on - strand at 658.587 kb on - strand at 658.691 kb on - strand at 658.705 kb on - strand at 658.769 kb on + strand at 658.769 kb on + strand at 658.769 kb on + strand at 658.788 kb on - strand at 658.859 kb on + strand, within EX28DRAFT_0664 at 658.984 kb on + strand, within EX28DRAFT_0664 at 658.984 kb on + strand, within EX28DRAFT_0664 at 659.021 kb on - strand, within EX28DRAFT_0664 at 659.021 kb on - strand, within EX28DRAFT_0664 at 659.219 kb on - strand, within EX28DRAFT_0664 at 659.219 kb on - strand, within EX28DRAFT_0664 at 659.263 kb on + strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.287 kb on + strand, within EX28DRAFT_0664 at 659.288 kb on - strand, within EX28DRAFT_0664 at 659.362 kb on + strand, within EX28DRAFT_0664 at 659.362 kb on + strand, within EX28DRAFT_0664 at 659.363 kb on - strand, within EX28DRAFT_0664 at 659.363 kb on - strand, within EX28DRAFT_0664 at 659.363 kb on - strand, within EX28DRAFT_0664 at 659.372 kb on - strand, within EX28DRAFT_0664 at 659.394 kb on - strand, within EX28DRAFT_0664 at 659.670 kb on - strand, within EX28DRAFT_0664 at 659.751 kb on - strand, within EX28DRAFT_0664 at 659.832 kb on - strand at 659.834 kb on + strand at 659.835 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.917 kb on - strand at 659.969 kb on + strand at 659.985 kb on - strand at 659.997 kb on + strand at 659.997 kb on + strand at 659.997 kb on + strand at 659.998 kb on - strand at 660.001 kb on + strand at 660.001 kb on + strand at 660.002 kb on - strand at 660.003 kb on + strand at 660.149 kb on - strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.231 kb on - strand at 660.278 kb on + strand at 660.382 kb on - strand at 660.540 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.656 kb on + strand, within EX28DRAFT_0665 at 660.657 kb on - strand, within EX28DRAFT_0665 at 660.658 kb on - strand, within EX28DRAFT_0665 at 660.781 kb on - strand, within EX28DRAFT_0665 at 660.861 kb on + strand, within EX28DRAFT_0665 at 660.921 kb on + strand at 660.952 kb on - strand at 660.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 657,913 + -3.1 657,914 - -1.2 657,914 - -1.1 658,048 - -0.0 658,048 - +2.0 658,063 + -3.5 658,064 - -0.3 658,075 - +2.6 658,077 + -0.0 658,243 - EX28DRAFT_0663 0.32 -1.2 658,324 + EX28DRAFT_0663 0.48 -0.6 658,325 - EX28DRAFT_0663 0.48 +0.5 658,577 + +0.3 658,578 - -0.1 658,587 - -1.4 658,691 - -1.1 658,705 - +2.5 658,769 + -2.7 658,769 + -2.4 658,769 + -0.1 658,788 - -1.3 658,859 + EX28DRAFT_0664 0.13 -0.5 658,984 + EX28DRAFT_0664 0.23 -0.4 658,984 + EX28DRAFT_0664 0.23 -0.1 659,021 - EX28DRAFT_0664 0.26 +1.1 659,021 - EX28DRAFT_0664 0.26 -1.7 659,219 - EX28DRAFT_0664 0.42 +0.2 659,219 - EX28DRAFT_0664 0.42 -0.7 659,263 + EX28DRAFT_0664 0.45 -2.5 659,264 - EX28DRAFT_0664 0.45 -2.9 659,264 - EX28DRAFT_0664 0.45 +0.9 659,264 - EX28DRAFT_0664 0.45 -0.5 659,264 - EX28DRAFT_0664 0.45 +1.4 659,264 - EX28DRAFT_0664 0.45 +0.0 659,287 + EX28DRAFT_0664 0.47 +1.6 659,288 - EX28DRAFT_0664 0.47 -0.4 659,362 + EX28DRAFT_0664 0.53 +1.7 659,362 + EX28DRAFT_0664 0.53 +0.4 659,363 - EX28DRAFT_0664 0.53 -0.6 659,363 - EX28DRAFT_0664 0.53 -2.3 659,363 - EX28DRAFT_0664 0.53 +0.8 659,372 - EX28DRAFT_0664 0.54 +5.2 659,394 - EX28DRAFT_0664 0.56 -1.3 659,670 - EX28DRAFT_0664 0.77 +0.3 659,751 - EX28DRAFT_0664 0.84 -1.1 659,832 - -0.6 659,834 + +0.5 659,835 - +1.8 659,873 - +0.6 659,873 - +4.1 659,873 - -0.7 659,873 - -2.5 659,873 - +1.3 659,873 - +0.5 659,917 - +0.3 659,969 + -4.6 659,985 - -0.2 659,997 + +0.5 659,997 + -4.0 659,997 + -0.1 659,998 - -0.1 660,001 + -0.5 660,001 + +1.3 660,002 - -1.9 660,003 + +0.9 660,149 - +0.3 660,230 + -0.3 660,230 + +0.0 660,230 + -0.2 660,230 + +0.9 660,230 + -5.9 660,231 - -1.3 660,278 + -1.6 660,382 - -0.9 660,540 - EX28DRAFT_0665 0.27 -0.5 660,591 - EX28DRAFT_0665 0.36 +1.4 660,591 - EX28DRAFT_0665 0.36 +0.4 660,591 - EX28DRAFT_0665 0.36 +5.4 660,654 + EX28DRAFT_0665 0.47 +4.8 660,654 + EX28DRAFT_0665 0.47 +1.5 660,654 + EX28DRAFT_0665 0.47 +0.4 660,655 - EX28DRAFT_0665 0.47 +3.3 660,655 - EX28DRAFT_0665 0.47 +0.4 660,655 - EX28DRAFT_0665 0.47 -2.0 660,655 - EX28DRAFT_0665 0.47 -0.4 660,656 + EX28DRAFT_0665 0.47 +0.8 660,657 - EX28DRAFT_0665 0.48 +0.4 660,658 - EX28DRAFT_0665 0.48 -2.4 660,781 - EX28DRAFT_0665 0.69 +0.0 660,861 + EX28DRAFT_0665 0.83 -0.0 660,921 + -0.0 660,952 - +0.1 660,952 - -0.3
Or see this region's nucleotide sequence