Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0641

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0639 and EX28DRAFT_0640 overlap by 4 nucleotidesEX28DRAFT_0640 and EX28DRAFT_0641 overlap by 4 nucleotidesEX28DRAFT_0641 and EX28DRAFT_0642 are separated by 8 nucleotides EX28DRAFT_0639: EX28DRAFT_0639 - ABC-type branched-chain amino acid transport systems, ATPase component, at 633,023 to 633,739 _0639 EX28DRAFT_0640: EX28DRAFT_0640 - ABC-type branched-chain amino acid transport systems, ATPase component, at 633,736 to 634,611 _0640 EX28DRAFT_0641: EX28DRAFT_0641 - ABC-type branched-chain amino acid transport system, permease component, at 634,608 to 635,885 _0641 EX28DRAFT_0642: EX28DRAFT_0642 - Branched-chain amino acid ABC-type transport system, permease components, at 635,894 to 636,808 _0642 Position (kb) 634 635 636Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 633.740 kb on - strandat 633.826 kb on - strand, within EX28DRAFT_0640at 633.899 kb on - strand, within EX28DRAFT_0640at 633.902 kb on - strand, within EX28DRAFT_0640at 633.936 kb on + strand, within EX28DRAFT_0640at 633.952 kb on - strand, within EX28DRAFT_0640at 634.164 kb on + strand, within EX28DRAFT_0640at 634.203 kb on + strand, within EX28DRAFT_0640at 634.203 kb on + strand, within EX28DRAFT_0640at 634.204 kb on - strand, within EX28DRAFT_0640at 634.351 kb on - strand, within EX28DRAFT_0640at 634.419 kb on + strand, within EX28DRAFT_0640at 634.420 kb on - strand, within EX28DRAFT_0640at 634.424 kb on - strand, within EX28DRAFT_0640at 634.424 kb on - strand, within EX28DRAFT_0640at 634.448 kb on + strand, within EX28DRAFT_0640at 634.449 kb on - strand, within EX28DRAFT_0640at 634.468 kb on - strand, within EX28DRAFT_0640at 634.528 kb on + strandat 634.558 kb on - strandat 634.594 kb on + strandat 634.595 kb on - strandat 634.790 kb on + strand, within EX28DRAFT_0641at 634.791 kb on - strand, within EX28DRAFT_0641at 634.791 kb on - strand, within EX28DRAFT_0641at 634.876 kb on + strand, within EX28DRAFT_0641at 634.876 kb on + strand, within EX28DRAFT_0641at 634.956 kb on + strand, within EX28DRAFT_0641at 634.957 kb on - strand, within EX28DRAFT_0641at 635.039 kb on + strand, within EX28DRAFT_0641at 635.044 kb on + strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.084 kb on + strand, within EX28DRAFT_0641at 635.085 kb on - strand, within EX28DRAFT_0641at 635.090 kb on + strand, within EX28DRAFT_0641at 635.111 kb on - strand, within EX28DRAFT_0641at 635.291 kb on - strand, within EX28DRAFT_0641at 635.392 kb on + strand, within EX28DRAFT_0641at 635.444 kb on - strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.539 kb on + strand, within EX28DRAFT_0641at 635.539 kb on + strand, within EX28DRAFT_0641at 635.540 kb on - strand, within EX28DRAFT_0641at 635.588 kb on + strand, within EX28DRAFT_0641at 635.589 kb on - strand, within EX28DRAFT_0641at 635.589 kb on - strand, within EX28DRAFT_0641at 635.632 kb on + strand, within EX28DRAFT_0641at 635.634 kb on + strand, within EX28DRAFT_0641at 635.765 kb on + strandat 636.247 kb on + strand, within EX28DRAFT_0642at 636.247 kb on + strand, within EX28DRAFT_0642at 636.248 kb on - strand, within EX28DRAFT_0642at 636.358 kb on - strand, within EX28DRAFT_0642at 636.358 kb on - strand, within EX28DRAFT_0642at 636.532 kb on - strand, within EX28DRAFT_0642at 636.663 kb on + strand, within EX28DRAFT_0642at 636.677 kb on - strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.771 kb on - strandat 636.779 kb on - strandat 636.779 kb on - strandat 636.802 kb on + strandat 636.802 kb on + strandat 636.802 kb on + strandat 636.803 kb on - strandat 636.858 kb on - strandat 636.858 kb on - strandat 636.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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633,740 - -2.1
633,826 - EX28DRAFT_0640 0.10 -0.4
633,899 - EX28DRAFT_0640 0.19 -0.2
633,902 - EX28DRAFT_0640 0.19 -3.0
633,936 + EX28DRAFT_0640 0.23 -1.4
633,952 - EX28DRAFT_0640 0.25 +0.7
634,164 + EX28DRAFT_0640 0.49 -0.1
634,203 + EX28DRAFT_0640 0.53 +1.9
634,203 + EX28DRAFT_0640 0.53 -0.3
634,204 - EX28DRAFT_0640 0.53 -0.5
634,351 - EX28DRAFT_0640 0.70 -0.6
634,419 + EX28DRAFT_0640 0.78 +1.0
634,420 - EX28DRAFT_0640 0.78 +0.7
634,424 - EX28DRAFT_0640 0.79 +1.9
634,424 - EX28DRAFT_0640 0.79 +4.0
634,448 + EX28DRAFT_0640 0.81 +1.0
634,449 - EX28DRAFT_0640 0.81 -0.4
634,468 - EX28DRAFT_0640 0.84 +0.3
634,528 + +0.1
634,558 - +0.2
634,594 + -1.1
634,595 - +1.3
634,790 + EX28DRAFT_0641 0.14 -0.4
634,791 - EX28DRAFT_0641 0.14 +0.9
634,791 - EX28DRAFT_0641 0.14 -0.7
634,876 + EX28DRAFT_0641 0.21 -1.6
634,876 + EX28DRAFT_0641 0.21 +1.1
634,956 + EX28DRAFT_0641 0.27 +0.4
634,957 - EX28DRAFT_0641 0.27 -0.3
635,039 + EX28DRAFT_0641 0.34 +0.6
635,044 + EX28DRAFT_0641 0.34 +0.5
635,045 - EX28DRAFT_0641 0.34 -1.4
635,045 - EX28DRAFT_0641 0.34 +0.3
635,045 - EX28DRAFT_0641 0.34 +0.4
635,084 + EX28DRAFT_0641 0.37 -0.9
635,085 - EX28DRAFT_0641 0.37 -0.6
635,090 + EX28DRAFT_0641 0.38 -0.1
635,111 - EX28DRAFT_0641 0.39 -0.7
635,291 - EX28DRAFT_0641 0.53 +0.7
635,392 + EX28DRAFT_0641 0.61 -0.7
635,444 - EX28DRAFT_0641 0.65 -2.3
635,506 + EX28DRAFT_0641 0.70 -1.0
635,506 + EX28DRAFT_0641 0.70 -1.8
635,506 + EX28DRAFT_0641 0.70 -1.6
635,539 + EX28DRAFT_0641 0.73 -3.3
635,539 + EX28DRAFT_0641 0.73 +0.2
635,540 - EX28DRAFT_0641 0.73 -0.1
635,588 + EX28DRAFT_0641 0.77 -1.7
635,589 - EX28DRAFT_0641 0.77 +1.1
635,589 - EX28DRAFT_0641 0.77 -0.2
635,632 + EX28DRAFT_0641 0.80 +1.6
635,634 + EX28DRAFT_0641 0.80 +0.7
635,765 + -0.2
636,247 + EX28DRAFT_0642 0.39 +2.0
636,247 + EX28DRAFT_0642 0.39 -1.0
636,248 - EX28DRAFT_0642 0.39 -0.2
636,358 - EX28DRAFT_0642 0.51 +2.4
636,358 - EX28DRAFT_0642 0.51 -0.2
636,532 - EX28DRAFT_0642 0.70 -0.8
636,663 + EX28DRAFT_0642 0.84 -0.5
636,677 - EX28DRAFT_0642 0.86 +2.3
636,678 + EX28DRAFT_0642 0.86 +1.1
636,678 + EX28DRAFT_0642 0.86 +1.2
636,678 + EX28DRAFT_0642 0.86 -1.7
636,679 - EX28DRAFT_0642 0.86 +0.8
636,679 - EX28DRAFT_0642 0.86 -0.9
636,679 - EX28DRAFT_0642 0.86 +1.7
636,679 - EX28DRAFT_0642 0.86 -0.5
636,771 - +1.2
636,779 - -2.1
636,779 - -1.6
636,802 + +0.8
636,802 + +3.1
636,802 + +0.8
636,803 - -4.4
636,858 - -2.0
636,858 - -0.1
636,858 - +2.6

Or see this region's nucleotide sequence