Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0623 and EX28DRAFT_0624 are separated by 62 nucleotides EX28DRAFT_0624 and EX28DRAFT_0625 are separated by 129 nucleotides EX28DRAFT_0625 and EX28DRAFT_0626 are separated by 54 nucleotides
EX28DRAFT_0623: EX28DRAFT_0623 - Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region, at 620,736 to 621,560
_0623
EX28DRAFT_0624: EX28DRAFT_0624 - hypothetical protein, at 621,623 to 622,828
_0624
EX28DRAFT_0625: EX28DRAFT_0625 - RNA polymerase sigma factor, FliA/WhiG family, at 622,958 to 623,677
_0625
EX28DRAFT_0626: EX28DRAFT_0626 - flagellar regulatory protein FliZ, at 623,732 to 624,283
_0626
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 620.750 kb on + strand at 620.750 kb on + strand at 620.754 kb on - strand at 620.810 kb on + strand at 621.162 kb on - strand, within EX28DRAFT_0623 at 621.193 kb on + strand, within EX28DRAFT_0623 at 621.597 kb on + strand at 621.854 kb on - strand, within EX28DRAFT_0624 at 621.893 kb on - strand, within EX28DRAFT_0624 at 621.893 kb on - strand, within EX28DRAFT_0624 at 621.893 kb on - strand, within EX28DRAFT_0624 at 622.039 kb on + strand, within EX28DRAFT_0624 at 622.039 kb on + strand, within EX28DRAFT_0624 at 622.039 kb on + strand, within EX28DRAFT_0624 at 622.039 kb on + strand, within EX28DRAFT_0624 at 622.040 kb on - strand, within EX28DRAFT_0624 at 622.175 kb on + strand, within EX28DRAFT_0624 at 622.253 kb on + strand, within EX28DRAFT_0624 at 622.322 kb on + strand, within EX28DRAFT_0624 at 622.515 kb on - strand, within EX28DRAFT_0624 at 622.556 kb on + strand, within EX28DRAFT_0624 at 622.557 kb on - strand, within EX28DRAFT_0624 at 622.609 kb on + strand, within EX28DRAFT_0624 at 622.620 kb on + strand, within EX28DRAFT_0624 at 622.638 kb on - strand, within EX28DRAFT_0624 at 622.638 kb on - strand, within EX28DRAFT_0624 at 622.645 kb on + strand, within EX28DRAFT_0624 at 622.696 kb on + strand, within EX28DRAFT_0624 at 622.697 kb on - strand, within EX28DRAFT_0624 at 622.699 kb on + strand, within EX28DRAFT_0624 at 622.741 kb on + strand at 622.774 kb on + strand at 622.775 kb on - strand at 622.776 kb on + strand at 622.776 kb on + strand at 622.776 kb on + strand at 622.776 kb on + strand at 622.777 kb on - strand at 622.777 kb on - strand at 622.777 kb on - strand at 622.939 kb on + strand at 622.939 kb on + strand at 622.940 kb on - strand at 622.954 kb on + strand at 622.970 kb on + strand at 622.971 kb on - strand at 622.986 kb on + strand at 622.986 kb on + strand at 622.987 kb on - strand at 623.015 kb on + strand at 623.015 kb on + strand at 623.016 kb on - strand at 623.115 kb on + strand, within EX28DRAFT_0625 at 623.115 kb on + strand, within EX28DRAFT_0625 at 623.116 kb on - strand, within EX28DRAFT_0625 at 623.159 kb on - strand, within EX28DRAFT_0625 at 623.166 kb on - strand, within EX28DRAFT_0625 at 623.348 kb on + strand, within EX28DRAFT_0625 at 623.374 kb on + strand, within EX28DRAFT_0625 at 623.375 kb on - strand, within EX28DRAFT_0625 at 623.375 kb on - strand, within EX28DRAFT_0625 at 623.377 kb on + strand, within EX28DRAFT_0625 at 623.393 kb on + strand, within EX28DRAFT_0625 at 623.475 kb on + strand, within EX28DRAFT_0625 at 623.475 kb on + strand, within EX28DRAFT_0625 at 623.475 kb on + strand, within EX28DRAFT_0625 at 623.512 kb on + strand, within EX28DRAFT_0625 at 623.544 kb on + strand, within EX28DRAFT_0625 at 623.544 kb on + strand, within EX28DRAFT_0625 at 623.545 kb on - strand, within EX28DRAFT_0625 at 623.555 kb on + strand, within EX28DRAFT_0625 at 623.556 kb on - strand, within EX28DRAFT_0625 at 623.556 kb on - strand, within EX28DRAFT_0625 at 623.676 kb on - strand at 623.729 kb on - strand at 623.750 kb on - strand at 623.785 kb on + strand at 623.816 kb on - strand, within EX28DRAFT_0626
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 620,750 + +1.0 620,750 + +0.1 620,754 - -2.1 620,810 + -1.4 621,162 - EX28DRAFT_0623 0.52 +1.3 621,193 + EX28DRAFT_0623 0.55 -0.9 621,597 + -0.4 621,854 - EX28DRAFT_0624 0.19 +1.1 621,893 - EX28DRAFT_0624 0.22 -1.1 621,893 - EX28DRAFT_0624 0.22 -1.4 621,893 - EX28DRAFT_0624 0.22 -2.1 622,039 + EX28DRAFT_0624 0.34 -0.2 622,039 + EX28DRAFT_0624 0.34 +0.0 622,039 + EX28DRAFT_0624 0.34 +2.2 622,039 + EX28DRAFT_0624 0.34 -2.5 622,040 - EX28DRAFT_0624 0.35 -1.4 622,175 + EX28DRAFT_0624 0.46 +1.5 622,253 + EX28DRAFT_0624 0.52 +3.6 622,322 + EX28DRAFT_0624 0.58 +4.3 622,515 - EX28DRAFT_0624 0.74 +0.7 622,556 + EX28DRAFT_0624 0.77 +0.0 622,557 - EX28DRAFT_0624 0.77 -0.3 622,609 + EX28DRAFT_0624 0.82 +0.8 622,620 + EX28DRAFT_0624 0.83 +0.3 622,638 - EX28DRAFT_0624 0.84 -1.6 622,638 - EX28DRAFT_0624 0.84 +0.1 622,645 + EX28DRAFT_0624 0.85 -0.7 622,696 + EX28DRAFT_0624 0.89 +2.8 622,697 - EX28DRAFT_0624 0.89 +2.8 622,699 + EX28DRAFT_0624 0.89 -0.7 622,741 + +0.5 622,774 + +1.2 622,775 - -1.3 622,776 + +1.2 622,776 + -0.3 622,776 + +0.3 622,776 + +0.9 622,777 - +1.6 622,777 - -2.2 622,777 - -0.8 622,939 + +0.9 622,939 + -0.6 622,940 - +3.0 622,954 + +0.6 622,970 + +0.2 622,971 - -0.8 622,986 + +1.3 622,986 + -0.3 622,987 - -0.4 623,015 + -0.3 623,015 + -1.7 623,016 - -1.4 623,115 + EX28DRAFT_0625 0.22 -0.1 623,115 + EX28DRAFT_0625 0.22 +0.5 623,116 - EX28DRAFT_0625 0.22 -0.4 623,159 - EX28DRAFT_0625 0.28 -1.4 623,166 - EX28DRAFT_0625 0.29 +0.3 623,348 + EX28DRAFT_0625 0.54 -2.9 623,374 + EX28DRAFT_0625 0.58 -0.1 623,375 - EX28DRAFT_0625 0.58 -2.4 623,375 - EX28DRAFT_0625 0.58 -1.3 623,377 + EX28DRAFT_0625 0.58 -2.0 623,393 + EX28DRAFT_0625 0.60 +0.7 623,475 + EX28DRAFT_0625 0.72 -0.4 623,475 + EX28DRAFT_0625 0.72 +2.4 623,475 + EX28DRAFT_0625 0.72 -0.0 623,512 + EX28DRAFT_0625 0.77 -0.2 623,544 + EX28DRAFT_0625 0.81 -1.3 623,544 + EX28DRAFT_0625 0.81 -1.4 623,545 - EX28DRAFT_0625 0.82 -0.6 623,555 + EX28DRAFT_0625 0.83 +0.2 623,556 - EX28DRAFT_0625 0.83 +0.1 623,556 - EX28DRAFT_0625 0.83 +0.3 623,676 - +0.4 623,729 - -0.1 623,750 - +0.2 623,785 + +5.9 623,816 - EX28DRAFT_0626 0.15 -0.5
Or see this region's nucleotide sequence