Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0608

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0606 and EX28DRAFT_0607 overlap by 1 nucleotidesEX28DRAFT_0607 and EX28DRAFT_0608 are separated by 2 nucleotidesEX28DRAFT_0608 and EX28DRAFT_0609 overlap by 4 nucleotides EX28DRAFT_0606: EX28DRAFT_0606 - flagellar biosynthetic protein FliP, at 605,888 to 606,625 _0606 EX28DRAFT_0607: EX28DRAFT_0607 - flagellar biosynthetic protein FliO, at 606,625 to 606,999 _0607 EX28DRAFT_0608: EX28DRAFT_0608 - flagellar motor switch protein FliN, at 607,002 to 607,415 _0608 EX28DRAFT_0609: EX28DRAFT_0609 - flagellar motor switch protein FliM, at 607,412 to 608,416 _0609 Position (kb) 607 608Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 606.105 kb on + strand, within EX28DRAFT_0606at 606.106 kb on - strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.215 kb on - strand, within EX28DRAFT_0606at 606.300 kb on + strand, within EX28DRAFT_0606at 606.300 kb on + strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.481 kb on + strand, within EX28DRAFT_0606at 606.567 kb on + strandat 606.567 kb on + strandat 606.568 kb on - strandat 606.568 kb on - strandat 606.726 kb on + strand, within EX28DRAFT_0607at 606.726 kb on + strand, within EX28DRAFT_0607at 606.727 kb on - strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.733 kb on + strand, within EX28DRAFT_0607at 606.734 kb on - strand, within EX28DRAFT_0607at 606.734 kb on - strand, within EX28DRAFT_0607at 606.744 kb on + strand, within EX28DRAFT_0607at 606.744 kb on + strand, within EX28DRAFT_0607at 606.906 kb on + strand, within EX28DRAFT_0607at 606.906 kb on + strand, within EX28DRAFT_0607at 606.916 kb on - strand, within EX28DRAFT_0607at 606.916 kb on - strand, within EX28DRAFT_0607at 606.979 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.023 kb on - strandat 607.053 kb on - strand, within EX28DRAFT_0608at 607.056 kb on + strand, within EX28DRAFT_0608at 607.063 kb on + strand, within EX28DRAFT_0608at 607.063 kb on + strand, within EX28DRAFT_0608at 607.064 kb on - strand, within EX28DRAFT_0608at 607.191 kb on - strand, within EX28DRAFT_0608at 607.347 kb on + strand, within EX28DRAFT_0608at 607.541 kb on - strand, within EX28DRAFT_0609at 607.583 kb on + strand, within EX28DRAFT_0609at 607.846 kb on + strand, within EX28DRAFT_0609at 607.853 kb on - strand, within EX28DRAFT_0609at 607.921 kb on + strand, within EX28DRAFT_0609at 607.922 kb on - strand, within EX28DRAFT_0609at 607.923 kb on + strand, within EX28DRAFT_0609at 607.923 kb on + strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 608.179 kb on + strand, within EX28DRAFT_0609at 608.180 kb on - strand, within EX28DRAFT_0609at 608.219 kb on - strand, within EX28DRAFT_0609at 608.276 kb on + strand, within EX28DRAFT_0609at 608.276 kb on + strand, within EX28DRAFT_0609at 608.277 kb on - strand, within EX28DRAFT_0609at 608.277 kb on - strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.313 kb on - strand, within EX28DRAFT_0609at 608.313 kb on - strand, within EX28DRAFT_0609at 608.315 kb on - strand, within EX28DRAFT_0609at 608.317 kb on - strandat 608.404 kb on + strandat 608.405 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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606,105 + EX28DRAFT_0606 0.29 +0.5
606,106 - EX28DRAFT_0606 0.30 -1.5
606,214 + EX28DRAFT_0606 0.44 -1.0
606,214 + EX28DRAFT_0606 0.44 -1.9
606,214 + EX28DRAFT_0606 0.44 -0.8
606,214 + EX28DRAFT_0606 0.44 -1.1
606,215 - EX28DRAFT_0606 0.44 -1.2
606,300 + EX28DRAFT_0606 0.56 -0.6
606,300 + EX28DRAFT_0606 0.56 -2.6
606,467 - EX28DRAFT_0606 0.78 +2.0
606,467 - EX28DRAFT_0606 0.78 -0.0
606,467 - EX28DRAFT_0606 0.78 +0.5
606,481 + EX28DRAFT_0606 0.80 +0.5
606,567 + -0.2
606,567 + -0.8
606,568 - -1.3
606,568 - -2.3
606,726 + EX28DRAFT_0607 0.27 -0.9
606,726 + EX28DRAFT_0607 0.27 -0.5
606,727 - EX28DRAFT_0607 0.27 -1.0
606,730 + EX28DRAFT_0607 0.28 -0.5
606,730 + EX28DRAFT_0607 0.28 -0.7
606,730 + EX28DRAFT_0607 0.28 +0.6
606,730 + EX28DRAFT_0607 0.28 -0.3
606,731 - EX28DRAFT_0607 0.28 -0.4
606,731 - EX28DRAFT_0607 0.28 -0.1
606,731 - EX28DRAFT_0607 0.28 +0.1
606,731 - EX28DRAFT_0607 0.28 -0.6
606,731 - EX28DRAFT_0607 0.28 -1.0
606,731 - EX28DRAFT_0607 0.28 +0.6
606,733 + EX28DRAFT_0607 0.29 -0.7
606,734 - EX28DRAFT_0607 0.29 -0.4
606,734 - EX28DRAFT_0607 0.29 -0.5
606,744 + EX28DRAFT_0607 0.32 +0.2
606,744 + EX28DRAFT_0607 0.32 -0.5
606,906 + EX28DRAFT_0607 0.75 +0.4
606,906 + EX28DRAFT_0607 0.75 +0.0
606,916 - EX28DRAFT_0607 0.78 -0.2
606,916 - EX28DRAFT_0607 0.78 -0.2
606,979 + +3.0
607,022 + -0.4
607,022 + -1.0
607,022 + +0.4
607,022 + -1.3
607,022 + -0.1
607,023 - +0.1
607,053 - EX28DRAFT_0608 0.12 +0.0
607,056 + EX28DRAFT_0608 0.13 -1.1
607,063 + EX28DRAFT_0608 0.15 +0.3
607,063 + EX28DRAFT_0608 0.15 +0.4
607,064 - EX28DRAFT_0608 0.15 +0.2
607,191 - EX28DRAFT_0608 0.46 -0.8
607,347 + EX28DRAFT_0608 0.83 -2.5
607,541 - EX28DRAFT_0609 0.13 -1.1
607,583 + EX28DRAFT_0609 0.17 -0.1
607,846 + EX28DRAFT_0609 0.43 -0.5
607,853 - EX28DRAFT_0609 0.44 -2.3
607,921 + EX28DRAFT_0609 0.51 +0.2
607,922 - EX28DRAFT_0609 0.51 -0.5
607,923 + EX28DRAFT_0609 0.51 -0.8
607,923 + EX28DRAFT_0609 0.51 -1.0
607,924 - EX28DRAFT_0609 0.51 +1.3
607,924 - EX28DRAFT_0609 0.51 +0.6
607,924 - EX28DRAFT_0609 0.51 -0.5
607,924 - EX28DRAFT_0609 0.51 -2.7
607,924 - EX28DRAFT_0609 0.51 -1.2
607,924 - EX28DRAFT_0609 0.51 -4.1
607,924 - EX28DRAFT_0609 0.51 +1.1
607,924 - EX28DRAFT_0609 0.51 -0.5
607,994 + EX28DRAFT_0609 0.58 -1.5
607,994 + EX28DRAFT_0609 0.58 -0.1
607,994 + EX28DRAFT_0609 0.58 -2.0
607,994 + EX28DRAFT_0609 0.58 -1.9
608,179 + EX28DRAFT_0609 0.76 -0.7
608,180 - EX28DRAFT_0609 0.76 -0.7
608,219 - EX28DRAFT_0609 0.80 +0.1
608,276 + EX28DRAFT_0609 0.86 -0.7
608,276 + EX28DRAFT_0609 0.86 +2.4
608,277 - EX28DRAFT_0609 0.86 -0.9
608,277 - EX28DRAFT_0609 0.86 -0.8
608,312 + EX28DRAFT_0609 0.90 -0.6
608,312 + EX28DRAFT_0609 0.90 -1.9
608,312 + EX28DRAFT_0609 0.90 -0.7
608,312 + EX28DRAFT_0609 0.90 -0.3
608,312 + EX28DRAFT_0609 0.90 +1.4
608,313 - EX28DRAFT_0609 0.90 -2.2
608,313 - EX28DRAFT_0609 0.90 -0.8
608,315 - EX28DRAFT_0609 0.90 +1.1
608,317 - +0.6
608,404 + +0.7
608,405 - +1.2

Or see this region's nucleotide sequence