Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0598 and EX28DRAFT_0599 overlap by 4 nucleotides EX28DRAFT_0599 and EX28DRAFT_0600 are separated by 205 nucleotides EX28DRAFT_0600 and EX28DRAFT_0601 are separated by 9 nucleotides EX28DRAFT_0601 and EX28DRAFT_0602 are separated by 129 nucleotides EX28DRAFT_0602 and EX28DRAFT_0603 are separated by 101 nucleotides
EX28DRAFT_0598: EX28DRAFT_0598 - diguanylate cyclase (GGDEF) domain, at 600,344 to 602,152
_0598
EX28DRAFT_0599: EX28DRAFT_0599 - mannosyl-3-phosphoglycerate phosphatase-related protein, at 602,149 to 602,949
_0599
EX28DRAFT_0600: EX28DRAFT_0600 - RNA, at 603,155 to 603,241
_0600
EX28DRAFT_0601: EX28DRAFT_0601 - Protein of unknown function (DUF2525), at 603,251 to 603,478
_0601
EX28DRAFT_0602: EX28DRAFT_0602 - Dextransucrase DSRB, at 603,608 to 603,796
_0602
EX28DRAFT_0603: EX28DRAFT_0603 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 603,898 to 604,521
_0603
Position (kb) 602
603 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 601.171 kb on + strand, within EX28DRAFT_0598 at 601.172 kb on - strand, within EX28DRAFT_0598 at 601.196 kb on + strand, within EX28DRAFT_0598 at 601.197 kb on - strand, within EX28DRAFT_0598 at 601.238 kb on - strand, within EX28DRAFT_0598 at 601.323 kb on + strand, within EX28DRAFT_0598 at 601.324 kb on + strand, within EX28DRAFT_0598 at 601.325 kb on - strand, within EX28DRAFT_0598 at 601.571 kb on - strand, within EX28DRAFT_0598 at 601.581 kb on + strand, within EX28DRAFT_0598 at 601.582 kb on - strand, within EX28DRAFT_0598 at 601.625 kb on + strand, within EX28DRAFT_0598 at 601.625 kb on + strand, within EX28DRAFT_0598 at 601.626 kb on - strand, within EX28DRAFT_0598 at 601.626 kb on - strand, within EX28DRAFT_0598 at 601.783 kb on + strand, within EX28DRAFT_0598 at 601.960 kb on + strand, within EX28DRAFT_0598 at 601.981 kb on + strand at 602.064 kb on - strand at 602.266 kb on - strand, within EX28DRAFT_0599 at 602.513 kb on - strand, within EX28DRAFT_0599 at 602.619 kb on + strand, within EX28DRAFT_0599 at 602.711 kb on - strand, within EX28DRAFT_0599 at 602.836 kb on - strand, within EX28DRAFT_0599 at 602.879 kb on + strand at 602.879 kb on + strand at 602.879 kb on + strand at 602.880 kb on - strand at 602.880 kb on - strand at 602.880 kb on - strand at 602.880 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.932 kb on - strand at 603.110 kb on - strand at 603.115 kb on + strand at 603.117 kb on + strand at 603.145 kb on + strand at 603.157 kb on + strand at 603.157 kb on + strand at 603.157 kb on + strand at 603.157 kb on + strand at 603.158 kb on - strand at 603.158 kb on - strand at 603.158 kb on - strand at 603.202 kb on + strand, within EX28DRAFT_0600 at 603.275 kb on - strand, within EX28DRAFT_0601 at 603.318 kb on + strand, within EX28DRAFT_0601 at 603.319 kb on - strand, within EX28DRAFT_0601 at 603.460 kb on - strand at 603.511 kb on + strand at 603.515 kb on + strand at 603.515 kb on + strand at 603.516 kb on - strand at 603.518 kb on - strand at 603.578 kb on + strand at 603.579 kb on - strand at 603.607 kb on + strand at 603.607 kb on + strand at 603.608 kb on - strand at 603.608 kb on - strand at 603.608 kb on - strand at 603.608 kb on - strand at 603.705 kb on - strand, within EX28DRAFT_0602 at 603.795 kb on - strand at 603.876 kb on - strand at 603.891 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 601,171 + EX28DRAFT_0598 0.46 +0.2 601,172 - EX28DRAFT_0598 0.46 +0.7 601,196 + EX28DRAFT_0598 0.47 -0.5 601,197 - EX28DRAFT_0598 0.47 -1.2 601,238 - EX28DRAFT_0598 0.49 +0.0 601,323 + EX28DRAFT_0598 0.54 +1.3 601,324 + EX28DRAFT_0598 0.54 -0.3 601,325 - EX28DRAFT_0598 0.54 -1.5 601,571 - EX28DRAFT_0598 0.68 +2.0 601,581 + EX28DRAFT_0598 0.68 -1.7 601,582 - EX28DRAFT_0598 0.68 +3.6 601,625 + EX28DRAFT_0598 0.71 -0.9 601,625 + EX28DRAFT_0598 0.71 +1.4 601,626 - EX28DRAFT_0598 0.71 -1.7 601,626 - EX28DRAFT_0598 0.71 +1.2 601,783 + EX28DRAFT_0598 0.80 -0.3 601,960 + EX28DRAFT_0598 0.89 +1.8 601,981 + -1.3 602,064 - -0.0 602,266 - EX28DRAFT_0599 0.15 +0.0 602,513 - EX28DRAFT_0599 0.45 -1.0 602,619 + EX28DRAFT_0599 0.59 +3.0 602,711 - EX28DRAFT_0599 0.70 -1.1 602,836 - EX28DRAFT_0599 0.86 -0.0 602,879 + +0.2 602,879 + -1.0 602,879 + -0.1 602,880 - +2.0 602,880 - +0.7 602,880 - +0.5 602,880 - -1.1 602,931 + -0.9 602,931 + -0.7 602,932 - +1.2 603,110 - +0.3 603,115 + -0.5 603,117 + -1.0 603,145 + +4.7 603,157 + +0.2 603,157 + +0.2 603,157 + +1.0 603,157 + +1.1 603,158 - +1.2 603,158 - -0.4 603,158 - +0.7 603,202 + EX28DRAFT_0600 0.54 -0.8 603,275 - EX28DRAFT_0601 0.11 +0.7 603,318 + EX28DRAFT_0601 0.29 -0.6 603,319 - EX28DRAFT_0601 0.30 +1.8 603,460 - -0.8 603,511 + +0.7 603,515 + +3.0 603,515 + -1.9 603,516 - +1.2 603,518 - +0.4 603,578 + +0.8 603,579 - +1.3 603,607 + -2.1 603,607 + +0.4 603,608 - -0.3 603,608 - -0.9 603,608 - +0.2 603,608 - +1.9 603,705 - EX28DRAFT_0602 0.51 +0.0 603,795 - +0.0 603,876 - -2.0 603,891 + +1.0
Or see this region's nucleotide sequence