Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0463 and EX28DRAFT_0464 are separated by 170 nucleotides EX28DRAFT_0464 and EX28DRAFT_0465 are separated by 438 nucleotides EX28DRAFT_0465 and EX28DRAFT_0466 overlap by 4 nucleotides
EX28DRAFT_0463: EX28DRAFT_0463 - Site-specific recombinases, DNA invertase Pin homologs, at 447,170 to 447,796
_0463
EX28DRAFT_0464: EX28DRAFT_0464 - hypothetical protein, at 447,967 to 448,158
_0464
EX28DRAFT_0465: EX28DRAFT_0465 - hypothetical protein, at 448,597 to 448,746
_0465
EX28DRAFT_0466: EX28DRAFT_0466 - hypothetical protein, at 448,743 to 449,234
_0466
Position (kb) 447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 446.968 kb on - strand at 446.968 kb on - strand at 446.998 kb on + strand at 446.999 kb on - strand at 447.075 kb on + strand at 447.075 kb on + strand at 447.076 kb on - strand at 447.076 kb on - strand at 447.076 kb on - strand at 447.099 kb on + strand at 447.099 kb on + strand at 447.099 kb on + strand at 447.108 kb on + strand at 447.108 kb on + strand at 447.108 kb on + strand at 447.108 kb on + strand at 447.108 kb on + strand at 447.109 kb on - strand at 447.109 kb on - strand at 447.109 kb on - strand at 447.109 kb on - strand at 447.137 kb on + strand at 447.138 kb on - strand at 447.144 kb on - strand at 447.251 kb on - strand, within EX28DRAFT_0463 at 447.270 kb on + strand, within EX28DRAFT_0463 at 447.278 kb on - strand, within EX28DRAFT_0463 at 447.318 kb on + strand, within EX28DRAFT_0463 at 447.323 kb on - strand, within EX28DRAFT_0463 at 447.379 kb on - strand, within EX28DRAFT_0463 at 447.478 kb on + strand, within EX28DRAFT_0463 at 447.479 kb on - strand, within EX28DRAFT_0463 at 447.546 kb on - strand, within EX28DRAFT_0463 at 447.546 kb on - strand, within EX28DRAFT_0463 at 447.673 kb on - strand, within EX28DRAFT_0463 at 447.766 kb on - strand at 447.786 kb on + strand at 447.786 kb on + strand at 447.787 kb on - strand at 447.787 kb on - strand at 447.791 kb on - strand at 447.791 kb on - strand at 447.791 kb on - strand at 447.791 kb on - strand at 447.851 kb on - strand at 447.851 kb on - strand at 447.851 kb on - strand at 447.914 kb on - strand at 447.914 kb on - strand at 447.915 kb on + strand at 447.916 kb on - strand at 447.939 kb on + strand at 447.939 kb on + strand at 447.939 kb on + strand at 447.995 kb on + strand, within EX28DRAFT_0464 at 447.996 kb on - strand, within EX28DRAFT_0464 at 448.033 kb on - strand, within EX28DRAFT_0464 at 448.093 kb on + strand, within EX28DRAFT_0464 at 448.093 kb on + strand, within EX28DRAFT_0464 at 448.125 kb on - strand, within EX28DRAFT_0464 at 448.159 kb on - strand at 448.159 kb on - strand at 448.159 kb on - strand at 448.164 kb on + strand at 448.237 kb on + strand at 448.237 kb on + strand at 448.237 kb on + strand at 448.238 kb on - strand at 448.251 kb on - strand at 448.251 kb on - strand at 448.264 kb on + strand at 448.286 kb on - strand at 448.424 kb on - strand at 448.513 kb on + strand at 448.514 kb on - strand at 448.523 kb on + strand at 448.785 kb on + strand at 448.851 kb on + strand, within EX28DRAFT_0466 at 448.852 kb on - strand, within EX28DRAFT_0466 at 448.924 kb on - strand, within EX28DRAFT_0466 at 448.971 kb on - strand, within EX28DRAFT_0466
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 446,968 - -0.6 446,968 - +1.1 446,998 + -2.0 446,999 - +0.6 447,075 + +1.9 447,075 + -0.6 447,076 - -0.2 447,076 - -2.6 447,076 - -0.6 447,099 + -1.3 447,099 + -0.3 447,099 + +0.1 447,108 + -2.1 447,108 + -0.6 447,108 + +0.5 447,108 + +2.0 447,108 + +0.1 447,109 - -0.6 447,109 - +0.7 447,109 - -0.2 447,109 - -0.7 447,137 + -0.0 447,138 - +2.2 447,144 - -0.7 447,251 - EX28DRAFT_0463 0.13 -1.0 447,270 + EX28DRAFT_0463 0.16 -1.5 447,278 - EX28DRAFT_0463 0.17 +1.2 447,318 + EX28DRAFT_0463 0.24 -0.4 447,323 - EX28DRAFT_0463 0.24 -1.2 447,379 - EX28DRAFT_0463 0.33 +1.9 447,478 + EX28DRAFT_0463 0.49 +1.0 447,479 - EX28DRAFT_0463 0.49 -0.9 447,546 - EX28DRAFT_0463 0.60 +0.1 447,546 - EX28DRAFT_0463 0.60 -3.0 447,673 - EX28DRAFT_0463 0.80 +0.1 447,766 - -2.0 447,786 + -2.0 447,786 + -0.8 447,787 - -2.1 447,787 - -0.4 447,791 - +1.1 447,791 - +1.4 447,791 - +4.0 447,791 - +0.3 447,851 - +0.3 447,851 - -0.6 447,851 - -0.2 447,914 - +0.9 447,914 - +0.2 447,915 + +0.1 447,916 - -1.7 447,939 + -1.9 447,939 + +0.1 447,939 + +1.0 447,995 + EX28DRAFT_0464 0.15 +0.6 447,996 - EX28DRAFT_0464 0.15 +0.6 448,033 - EX28DRAFT_0464 0.34 +1.1 448,093 + EX28DRAFT_0464 0.66 +2.0 448,093 + EX28DRAFT_0464 0.66 -1.9 448,125 - EX28DRAFT_0464 0.82 +0.4 448,159 - +0.6 448,159 - -3.1 448,159 - -1.2 448,164 + -1.4 448,237 + -0.5 448,237 + +4.8 448,237 + +0.8 448,238 - +0.3 448,251 - -2.0 448,251 - -1.8 448,264 + +1.0 448,286 - +1.1 448,424 - -0.9 448,513 + -0.9 448,514 - +1.2 448,523 + +0.5 448,785 + +1.2 448,851 + EX28DRAFT_0466 0.22 -2.1 448,852 - EX28DRAFT_0466 0.22 -0.6 448,924 - EX28DRAFT_0466 0.37 -0.4 448,971 - EX28DRAFT_0466 0.46 +0.5
Or see this region's nucleotide sequence