Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0453

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0451 and EX28DRAFT_0452 are separated by 67 nucleotidesEX28DRAFT_0452 and EX28DRAFT_0453 are separated by 159 nucleotidesEX28DRAFT_0453 and EX28DRAFT_0454 are separated by 10 nucleotides EX28DRAFT_0451: EX28DRAFT_0451 - sucrose-6-phosphate hydrolase, at 434,100 to 435,533 _0451 EX28DRAFT_0452: EX28DRAFT_0452 - hypothetical protein, at 435,601 to 436,071 _0452 EX28DRAFT_0453: EX28DRAFT_0453 - YadA-like C-terminal region/Collagen triple helix repeat (20 copies), at 436,231 to 437,082 _0453 EX28DRAFT_0454: EX28DRAFT_0454 - hypothetical protein, at 437,093 to 437,314 _0454 Position (kb) 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 435.232 kb on - strand, within EX28DRAFT_0451at 435.235 kb on + strand, within EX28DRAFT_0451at 435.236 kb on + strand, within EX28DRAFT_0451at 435.264 kb on + strand, within EX28DRAFT_0451at 435.265 kb on - strand, within EX28DRAFT_0451at 435.527 kb on - strandat 435.540 kb on + strandat 435.657 kb on + strand, within EX28DRAFT_0452at 435.685 kb on - strand, within EX28DRAFT_0452at 435.757 kb on + strand, within EX28DRAFT_0452at 435.758 kb on - strand, within EX28DRAFT_0452at 435.760 kb on + strand, within EX28DRAFT_0452at 435.775 kb on - strand, within EX28DRAFT_0452at 435.778 kb on - strand, within EX28DRAFT_0452at 435.816 kb on + strand, within EX28DRAFT_0452at 435.921 kb on - strand, within EX28DRAFT_0452at 435.921 kb on - strand, within EX28DRAFT_0452at 435.951 kb on - strand, within EX28DRAFT_0452at 435.958 kb on - strand, within EX28DRAFT_0452at 436.085 kb on + strandat 436.090 kb on - strandat 436.111 kb on + strandat 436.115 kb on + strandat 436.129 kb on - strandat 436.131 kb on - strandat 436.142 kb on + strandat 436.146 kb on + strandat 436.147 kb on - strandat 436.171 kb on - strandat 436.174 kb on - strandat 436.208 kb on + strandat 436.309 kb on - strandat 436.309 kb on - strandat 436.361 kb on + strand, within EX28DRAFT_0453at 436.361 kb on + strand, within EX28DRAFT_0453at 436.414 kb on + strand, within EX28DRAFT_0453at 436.464 kb on + strand, within EX28DRAFT_0453at 436.467 kb on + strand, within EX28DRAFT_0453at 436.507 kb on - strand, within EX28DRAFT_0453at 436.515 kb on + strand, within EX28DRAFT_0453at 436.529 kb on - strand, within EX28DRAFT_0453at 436.584 kb on + strand, within EX28DRAFT_0453at 436.584 kb on + strand, within EX28DRAFT_0453at 436.597 kb on - strand, within EX28DRAFT_0453at 436.785 kb on + strand, within EX28DRAFT_0453at 436.831 kb on + strand, within EX28DRAFT_0453at 436.831 kb on + strand, within EX28DRAFT_0453at 436.832 kb on - strand, within EX28DRAFT_0453at 436.832 kb on - strand, within EX28DRAFT_0453at 436.900 kb on - strand, within EX28DRAFT_0453at 436.900 kb on - strand, within EX28DRAFT_0453at 436.914 kb on + strand, within EX28DRAFT_0453at 436.984 kb on - strand, within EX28DRAFT_0453at 437.058 kb on + strandat 437.108 kb on - strandat 437.167 kb on + strand, within EX28DRAFT_0454at 437.192 kb on - strand, within EX28DRAFT_0454at 437.203 kb on + strand, within EX28DRAFT_0454at 437.306 kb on - strandat 437.786 kb on + strandat 437.806 kb on + strandat 437.948 kb on - strandat 438.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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435,232 - EX28DRAFT_0451 0.79 -1.6
435,235 + EX28DRAFT_0451 0.79 +2.0
435,236 + EX28DRAFT_0451 0.79 +0.2
435,264 + EX28DRAFT_0451 0.81 +0.1
435,265 - EX28DRAFT_0451 0.81 -0.2
435,527 - -1.6
435,540 + -0.1
435,657 + EX28DRAFT_0452 0.12 -0.4
435,685 - EX28DRAFT_0452 0.18 -2.0
435,757 + EX28DRAFT_0452 0.33 +0.6
435,758 - EX28DRAFT_0452 0.33 -0.9
435,760 + EX28DRAFT_0452 0.34 -1.1
435,775 - EX28DRAFT_0452 0.37 -1.0
435,778 - EX28DRAFT_0452 0.38 -0.1
435,816 + EX28DRAFT_0452 0.46 -0.8
435,921 - EX28DRAFT_0452 0.68 +0.8
435,921 - EX28DRAFT_0452 0.68 +1.4
435,951 - EX28DRAFT_0452 0.74 -2.8
435,958 - EX28DRAFT_0452 0.76 +1.4
436,085 + +0.0
436,090 - +0.4
436,111 + +0.4
436,115 + -2.4
436,129 - -1.3
436,131 - +0.4
436,142 + +0.4
436,146 + -1.2
436,147 - -1.3
436,171 - -0.7
436,174 - +0.8
436,208 + +0.4
436,309 - -1.7
436,309 - -1.7
436,361 + EX28DRAFT_0453 0.15 +2.0
436,361 + EX28DRAFT_0453 0.15 -0.5
436,414 + EX28DRAFT_0453 0.21 -3.5
436,464 + EX28DRAFT_0453 0.27 -0.5
436,467 + EX28DRAFT_0453 0.28 +1.0
436,507 - EX28DRAFT_0453 0.32 +0.7
436,515 + EX28DRAFT_0453 0.33 +2.2
436,529 - EX28DRAFT_0453 0.35 +0.2
436,584 + EX28DRAFT_0453 0.41 -1.5
436,584 + EX28DRAFT_0453 0.41 -2.3
436,597 - EX28DRAFT_0453 0.43 +0.9
436,785 + EX28DRAFT_0453 0.65 -2.3
436,831 + EX28DRAFT_0453 0.70 -0.4
436,831 + EX28DRAFT_0453 0.70 -1.2
436,832 - EX28DRAFT_0453 0.71 +0.4
436,832 - EX28DRAFT_0453 0.71 +0.1
436,900 - EX28DRAFT_0453 0.79 -1.0
436,900 - EX28DRAFT_0453 0.79 -3.5
436,914 + EX28DRAFT_0453 0.80 +0.0
436,984 - EX28DRAFT_0453 0.88 -0.2
437,058 + -0.5
437,108 - -2.5
437,167 + EX28DRAFT_0454 0.33 -1.0
437,192 - EX28DRAFT_0454 0.45 +0.8
437,203 + EX28DRAFT_0454 0.50 -0.0
437,306 - -2.3
437,786 + -0.2
437,806 + +2.2
437,948 - +0.6
438,024 + +0.0

Or see this region's nucleotide sequence