Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0450

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0449 and EX28DRAFT_0450 are separated by 238 nucleotidesEX28DRAFT_0450 and EX28DRAFT_0451 are separated by 17 nucleotides EX28DRAFT_0449: EX28DRAFT_0449 - transcriptional regulator, LacI family, at 431,595 to 432,602 _0449 EX28DRAFT_0450: EX28DRAFT_0450 - oligosaccharide:H+ symporter, at 432,841 to 434,082 _0450 EX28DRAFT_0451: EX28DRAFT_0451 - sucrose-6-phosphate hydrolase, at 434,100 to 435,533 _0451 Position (kb) 432 433 434 435Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 431.922 kb on - strand, within EX28DRAFT_0449at 431.929 kb on + strand, within EX28DRAFT_0449at 431.951 kb on + strand, within EX28DRAFT_0449at 431.951 kb on + strand, within EX28DRAFT_0449at 431.952 kb on - strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.954 kb on - strand, within EX28DRAFT_0449at 431.954 kb on - strand, within EX28DRAFT_0449at 432.105 kb on - strand, within EX28DRAFT_0449at 432.107 kb on - strand, within EX28DRAFT_0449at 432.133 kb on + strand, within EX28DRAFT_0449at 432.219 kb on + strand, within EX28DRAFT_0449at 432.219 kb on + strand, within EX28DRAFT_0449at 432.220 kb on - strand, within EX28DRAFT_0449at 432.235 kb on + strand, within EX28DRAFT_0449at 432.278 kb on + strand, within EX28DRAFT_0449at 432.305 kb on + strand, within EX28DRAFT_0449at 432.305 kb on + strand, within EX28DRAFT_0449at 432.305 kb on + strand, within EX28DRAFT_0449at 432.306 kb on - strand, within EX28DRAFT_0449at 432.306 kb on - strand, within EX28DRAFT_0449at 432.353 kb on + strand, within EX28DRAFT_0449at 432.354 kb on - strand, within EX28DRAFT_0449at 432.405 kb on + strand, within EX28DRAFT_0449at 432.406 kb on - strand, within EX28DRAFT_0449at 432.536 kb on + strandat 432.565 kb on - strandat 432.606 kb on - strandat 432.622 kb on + strandat 432.623 kb on - strandat 432.639 kb on - strandat 432.645 kb on - strandat 432.707 kb on + strandat 432.887 kb on + strandat 432.988 kb on + strand, within EX28DRAFT_0450at 432.989 kb on - strand, within EX28DRAFT_0450at 432.989 kb on - strand, within EX28DRAFT_0450at 432.989 kb on - strand, within EX28DRAFT_0450at 433.144 kb on - strand, within EX28DRAFT_0450at 433.530 kb on + strand, within EX28DRAFT_0450at 433.531 kb on - strand, within EX28DRAFT_0450at 433.534 kb on + strand, within EX28DRAFT_0450at 433.564 kb on + strand, within EX28DRAFT_0450at 433.564 kb on + strand, within EX28DRAFT_0450at 433.609 kb on + strand, within EX28DRAFT_0450at 433.609 kb on + strand, within EX28DRAFT_0450at 433.610 kb on - strand, within EX28DRAFT_0450at 433.610 kb on - strand, within EX28DRAFT_0450at 433.610 kb on - strand, within EX28DRAFT_0450at 433.610 kb on - strand, within EX28DRAFT_0450at 433.654 kb on - strand, within EX28DRAFT_0450at 433.734 kb on + strand, within EX28DRAFT_0450at 433.735 kb on - strand, within EX28DRAFT_0450at 433.735 kb on - strand, within EX28DRAFT_0450at 433.735 kb on - strand, within EX28DRAFT_0450at 433.788 kb on - strand, within EX28DRAFT_0450at 433.830 kb on + strand, within EX28DRAFT_0450at 433.834 kb on + strand, within EX28DRAFT_0450at 433.834 kb on + strand, within EX28DRAFT_0450at 433.835 kb on - strand, within EX28DRAFT_0450at 433.836 kb on + strand, within EX28DRAFT_0450at 433.836 kb on + strand, within EX28DRAFT_0450at 433.877 kb on - strand, within EX28DRAFT_0450at 433.880 kb on + strand, within EX28DRAFT_0450at 433.945 kb on + strand, within EX28DRAFT_0450at 433.945 kb on + strand, within EX28DRAFT_0450at 433.972 kb on + strandat 433.972 kb on + strandat 433.972 kb on + strandat 434.093 kb on + strandat 434.106 kb on + strandat 434.106 kb on + strandat 434.106 kb on + strandat 434.107 kb on - strandat 434.107 kb on - strandat 434.271 kb on + strand, within EX28DRAFT_0451at 434.323 kb on + strand, within EX28DRAFT_0451at 434.407 kb on + strand, within EX28DRAFT_0451at 434.408 kb on - strand, within EX28DRAFT_0451at 434.408 kb on - strand, within EX28DRAFT_0451at 434.445 kb on - strand, within EX28DRAFT_0451at 434.610 kb on + strand, within EX28DRAFT_0451at 434.610 kb on + strand, within EX28DRAFT_0451at 434.610 kb on + strand, within EX28DRAFT_0451at 434.611 kb on - strand, within EX28DRAFT_0451at 434.727 kb on + strand, within EX28DRAFT_0451at 434.728 kb on - strand, within EX28DRAFT_0451at 434.728 kb on - strand, within EX28DRAFT_0451at 434.729 kb on + strand, within EX28DRAFT_0451at 434.730 kb on - strand, within EX28DRAFT_0451at 434.730 kb on - strand, within EX28DRAFT_0451at 435.056 kb on + strand, within EX28DRAFT_0451

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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431,922 - EX28DRAFT_0449 0.32 +0.4
431,929 + EX28DRAFT_0449 0.33 -3.5
431,951 + EX28DRAFT_0449 0.35 -1.2
431,951 + EX28DRAFT_0449 0.35 +1.2
431,952 - EX28DRAFT_0449 0.35 -0.2
431,953 + EX28DRAFT_0449 0.36 -2.3
431,953 + EX28DRAFT_0449 0.36 +0.6
431,953 + EX28DRAFT_0449 0.36 -0.9
431,953 + EX28DRAFT_0449 0.36 -0.7
431,953 + EX28DRAFT_0449 0.36 +2.2
431,953 + EX28DRAFT_0449 0.36 -1.6
431,953 + EX28DRAFT_0449 0.36 +2.0
431,954 - EX28DRAFT_0449 0.36 -0.1
431,954 - EX28DRAFT_0449 0.36 -0.4
432,105 - EX28DRAFT_0449 0.51 +2.0
432,107 - EX28DRAFT_0449 0.51 -0.5
432,133 + EX28DRAFT_0449 0.53 +0.6
432,219 + EX28DRAFT_0449 0.62 +0.3
432,219 + EX28DRAFT_0449 0.62 -1.2
432,220 - EX28DRAFT_0449 0.62 +0.2
432,235 + EX28DRAFT_0449 0.63 -0.1
432,278 + EX28DRAFT_0449 0.68 -0.6
432,305 + EX28DRAFT_0449 0.70 -1.7
432,305 + EX28DRAFT_0449 0.70 -1.1
432,305 + EX28DRAFT_0449 0.70 -0.8
432,306 - EX28DRAFT_0449 0.71 +0.7
432,306 - EX28DRAFT_0449 0.71 -3.7
432,353 + EX28DRAFT_0449 0.75 -1.1
432,354 - EX28DRAFT_0449 0.75 -1.9
432,405 + EX28DRAFT_0449 0.80 -0.4
432,406 - EX28DRAFT_0449 0.80 +0.6
432,536 + +0.4
432,565 - +1.2
432,606 - +0.6
432,622 + +0.2
432,623 - -0.7
432,639 - +0.2
432,645 - -1.2
432,707 + +3.6
432,887 + +0.2
432,988 + EX28DRAFT_0450 0.12 +0.4
432,989 - EX28DRAFT_0450 0.12 +1.1
432,989 - EX28DRAFT_0450 0.12 -1.3
432,989 - EX28DRAFT_0450 0.12 -1.2
433,144 - EX28DRAFT_0450 0.24 +1.3
433,530 + EX28DRAFT_0450 0.55 -0.2
433,531 - EX28DRAFT_0450 0.56 -1.0
433,534 + EX28DRAFT_0450 0.56 -0.0
433,564 + EX28DRAFT_0450 0.58 -0.0
433,564 + EX28DRAFT_0450 0.58 -0.4
433,609 + EX28DRAFT_0450 0.62 +0.3
433,609 + EX28DRAFT_0450 0.62 +0.5
433,610 - EX28DRAFT_0450 0.62 -1.9
433,610 - EX28DRAFT_0450 0.62 -2.8
433,610 - EX28DRAFT_0450 0.62 -2.7
433,610 - EX28DRAFT_0450 0.62 +0.3
433,654 - EX28DRAFT_0450 0.65 +2.6
433,734 + EX28DRAFT_0450 0.72 -4.0
433,735 - EX28DRAFT_0450 0.72 +2.0
433,735 - EX28DRAFT_0450 0.72 +0.4
433,735 - EX28DRAFT_0450 0.72 -0.1
433,788 - EX28DRAFT_0450 0.76 +0.1
433,830 + EX28DRAFT_0450 0.80 +1.1
433,834 + EX28DRAFT_0450 0.80 -0.8
433,834 + EX28DRAFT_0450 0.80 +4.3
433,835 - EX28DRAFT_0450 0.80 +0.0
433,836 + EX28DRAFT_0450 0.80 +3.0
433,836 + EX28DRAFT_0450 0.80 -2.6
433,877 - EX28DRAFT_0450 0.83 +0.8
433,880 + EX28DRAFT_0450 0.84 +0.7
433,945 + EX28DRAFT_0450 0.89 -0.4
433,945 + EX28DRAFT_0450 0.89 +3.0
433,972 + +0.9
433,972 + -1.1
433,972 + +1.7
434,093 + -2.4
434,106 + -0.3
434,106 + +1.8
434,106 + -0.9
434,107 - +1.6
434,107 - +0.6
434,271 + EX28DRAFT_0451 0.12 +1.2
434,323 + EX28DRAFT_0451 0.16 +0.4
434,407 + EX28DRAFT_0451 0.21 +0.6
434,408 - EX28DRAFT_0451 0.21 -2.1
434,408 - EX28DRAFT_0451 0.21 -0.2
434,445 - EX28DRAFT_0451 0.24 -0.6
434,610 + EX28DRAFT_0451 0.36 +1.0
434,610 + EX28DRAFT_0451 0.36 -1.4
434,610 + EX28DRAFT_0451 0.36 -0.9
434,611 - EX28DRAFT_0451 0.36 -0.3
434,727 + EX28DRAFT_0451 0.44 -0.2
434,728 - EX28DRAFT_0451 0.44 -1.4
434,728 - EX28DRAFT_0451 0.44 -2.4
434,729 + EX28DRAFT_0451 0.44 -0.2
434,730 - EX28DRAFT_0451 0.44 +4.3
434,730 - EX28DRAFT_0451 0.44 +0.4
435,056 + EX28DRAFT_0451 0.67 +1.3

Or see this region's nucleotide sequence