Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0428

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0426 and EX28DRAFT_0427 are separated by 94 nucleotidesEX28DRAFT_0427 and EX28DRAFT_0428 are separated by 112 nucleotidesEX28DRAFT_0428 and EX28DRAFT_0429 are separated by 189 nucleotides EX28DRAFT_0426: EX28DRAFT_0426 - D-alanyl-D-alanine carboxypeptidase, at 405,423 to 406,346 _0426 EX28DRAFT_0427: EX28DRAFT_0427 - Sortase and related acyltransferases, at 406,441 to 406,995 _0427 EX28DRAFT_0428: EX28DRAFT_0428 - FAD/FMN-containing dehydrogenases, at 407,108 to 408,856 _0428 EX28DRAFT_0429: EX28DRAFT_0429 - Beta-glucosidase-related glycosidases, at 409,046 to 411,343 _0429 Position (kb) 407 408 409Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 406.176 kb on - strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.216 kb on - strand, within EX28DRAFT_0426at 406.247 kb on + strand, within EX28DRAFT_0426at 406.248 kb on - strand, within EX28DRAFT_0426at 406.300 kb on - strandat 406.300 kb on - strandat 406.485 kb on + strandat 406.515 kb on + strand, within EX28DRAFT_0427at 406.516 kb on - strand, within EX28DRAFT_0427at 406.516 kb on - strand, within EX28DRAFT_0427at 406.518 kb on - strand, within EX28DRAFT_0427at 406.518 kb on - strand, within EX28DRAFT_0427at 406.523 kb on - strand, within EX28DRAFT_0427at 406.563 kb on + strand, within EX28DRAFT_0427at 406.564 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.707 kb on - strand, within EX28DRAFT_0427at 406.725 kb on + strand, within EX28DRAFT_0427at 406.837 kb on - strand, within EX28DRAFT_0427at 406.861 kb on - strand, within EX28DRAFT_0427at 406.910 kb on + strand, within EX28DRAFT_0427at 406.910 kb on + strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 407.016 kb on + strandat 407.017 kb on - strandat 407.017 kb on - strandat 407.206 kb on + strandat 407.234 kb on - strandat 407.269 kb on + strandat 407.270 kb on - strandat 407.270 kb on - strandat 407.284 kb on - strand, within EX28DRAFT_0428at 407.361 kb on + strand, within EX28DRAFT_0428at 407.362 kb on - strand, within EX28DRAFT_0428at 407.386 kb on + strand, within EX28DRAFT_0428at 407.386 kb on + strand, within EX28DRAFT_0428at 407.386 kb on + strand, within EX28DRAFT_0428at 407.386 kb on + strand, within EX28DRAFT_0428at 407.387 kb on - strand, within EX28DRAFT_0428at 407.494 kb on + strand, within EX28DRAFT_0428at 407.495 kb on - strand, within EX28DRAFT_0428at 407.561 kb on + strand, within EX28DRAFT_0428at 407.590 kb on + strand, within EX28DRAFT_0428at 407.694 kb on + strand, within EX28DRAFT_0428at 407.694 kb on + strand, within EX28DRAFT_0428at 407.694 kb on + strand, within EX28DRAFT_0428at 407.695 kb on - strand, within EX28DRAFT_0428at 407.695 kb on - strand, within EX28DRAFT_0428at 407.695 kb on - strand, within EX28DRAFT_0428at 407.699 kb on - strand, within EX28DRAFT_0428at 407.884 kb on + strand, within EX28DRAFT_0428at 407.884 kb on + strand, within EX28DRAFT_0428at 407.885 kb on - strand, within EX28DRAFT_0428at 408.018 kb on + strand, within EX28DRAFT_0428at 408.174 kb on + strand, within EX28DRAFT_0428at 408.175 kb on - strand, within EX28DRAFT_0428at 408.175 kb on - strand, within EX28DRAFT_0428at 408.483 kb on + strand, within EX28DRAFT_0428at 408.643 kb on + strand, within EX28DRAFT_0428at 408.644 kb on - strand, within EX28DRAFT_0428at 408.892 kb on + strandat 408.893 kb on - strandat 408.909 kb on - strandat 408.928 kb on - strandat 408.928 kb on - strandat 409.037 kb on + strandat 409.038 kb on - strandat 409.066 kb on - strandat 409.120 kb on + strandat 409.576 kb on + strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.584 kb on + strand, within EX28DRAFT_0429at 409.585 kb on - strand, within EX28DRAFT_0429at 409.710 kb on - strand, within EX28DRAFT_0429at 409.751 kb on + strand, within EX28DRAFT_0429at 409.752 kb on - strand, within EX28DRAFT_0429at 409.763 kb on + strand, within EX28DRAFT_0429

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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406,176 - EX28DRAFT_0426 0.81 -1.5
406,215 + EX28DRAFT_0426 0.86 -0.1
406,215 + EX28DRAFT_0426 0.86 -0.4
406,215 + EX28DRAFT_0426 0.86 -3.6
406,215 + EX28DRAFT_0426 0.86 +0.5
406,215 + EX28DRAFT_0426 0.86 +2.6
406,216 - EX28DRAFT_0426 0.86 +2.2
406,247 + EX28DRAFT_0426 0.89 -1.3
406,248 - EX28DRAFT_0426 0.89 -4.0
406,300 - -0.4
406,300 - +0.7
406,485 + -2.4
406,515 + EX28DRAFT_0427 0.13 -0.8
406,516 - EX28DRAFT_0427 0.14 -1.5
406,516 - EX28DRAFT_0427 0.14 +2.2
406,518 - EX28DRAFT_0427 0.14 +0.7
406,518 - EX28DRAFT_0427 0.14 +2.1
406,523 - EX28DRAFT_0427 0.15 +1.2
406,563 + EX28DRAFT_0427 0.22 -1.3
406,564 - EX28DRAFT_0427 0.22 +2.2
406,588 - EX28DRAFT_0427 0.26 +1.4
406,588 - EX28DRAFT_0427 0.26 -2.3
406,588 - EX28DRAFT_0427 0.26 -3.6
406,588 - EX28DRAFT_0427 0.26 -0.5
406,707 - EX28DRAFT_0427 0.48 +0.1
406,725 + EX28DRAFT_0427 0.51 -1.4
406,837 - EX28DRAFT_0427 0.71 -1.5
406,861 - EX28DRAFT_0427 0.76 -3.1
406,910 + EX28DRAFT_0427 0.85 -2.5
406,910 + EX28DRAFT_0427 0.85 -1.6
406,911 - EX28DRAFT_0427 0.85 +0.8
406,911 - EX28DRAFT_0427 0.85 +0.7
406,911 - EX28DRAFT_0427 0.85 +2.4
406,911 - EX28DRAFT_0427 0.85 +1.4
406,911 - EX28DRAFT_0427 0.85 -0.7
407,016 + +1.2
407,017 - +0.7
407,017 - -1.5
407,206 + -0.6
407,234 - -0.6
407,269 + -0.2
407,270 - -0.3
407,270 - +0.7
407,284 - EX28DRAFT_0428 0.10 +0.1
407,361 + EX28DRAFT_0428 0.14 -0.4
407,362 - EX28DRAFT_0428 0.15 -0.3
407,386 + EX28DRAFT_0428 0.16 -2.5
407,386 + EX28DRAFT_0428 0.16 -0.2
407,386 + EX28DRAFT_0428 0.16 +0.6
407,386 + EX28DRAFT_0428 0.16 -1.4
407,387 - EX28DRAFT_0428 0.16 +1.1
407,494 + EX28DRAFT_0428 0.22 +0.6
407,495 - EX28DRAFT_0428 0.22 -1.6
407,561 + EX28DRAFT_0428 0.26 +1.6
407,590 + EX28DRAFT_0428 0.28 -0.8
407,694 + EX28DRAFT_0428 0.34 -0.3
407,694 + EX28DRAFT_0428 0.34 +1.9
407,694 + EX28DRAFT_0428 0.34 -0.0
407,695 - EX28DRAFT_0428 0.34 -0.3
407,695 - EX28DRAFT_0428 0.34 -1.9
407,695 - EX28DRAFT_0428 0.34 -1.2
407,699 - EX28DRAFT_0428 0.34 -0.6
407,884 + EX28DRAFT_0428 0.44 -2.9
407,884 + EX28DRAFT_0428 0.44 +0.2
407,885 - EX28DRAFT_0428 0.44 +1.1
408,018 + EX28DRAFT_0428 0.52 -1.2
408,174 + EX28DRAFT_0428 0.61 +0.4
408,175 - EX28DRAFT_0428 0.61 -3.7
408,175 - EX28DRAFT_0428 0.61 -0.5
408,483 + EX28DRAFT_0428 0.79 -0.7
408,643 + EX28DRAFT_0428 0.88 -0.2
408,644 - EX28DRAFT_0428 0.88 +0.6
408,892 + -0.9
408,893 - +0.7
408,909 - +0.0
408,928 - -1.9
408,928 - +1.3
409,037 + -3.6
409,038 - -1.4
409,066 - +0.4
409,120 + +0.3
409,576 + EX28DRAFT_0429 0.23 -0.8
409,581 - EX28DRAFT_0429 0.23 -2.0
409,581 - EX28DRAFT_0429 0.23 -2.2
409,581 - EX28DRAFT_0429 0.23 -1.9
409,581 - EX28DRAFT_0429 0.23 +0.8
409,581 - EX28DRAFT_0429 0.23 +0.6
409,584 + EX28DRAFT_0429 0.23 -2.0
409,585 - EX28DRAFT_0429 0.23 +0.4
409,710 - EX28DRAFT_0429 0.29 -1.8
409,751 + EX28DRAFT_0429 0.31 +0.2
409,752 - EX28DRAFT_0429 0.31 +1.3
409,763 + EX28DRAFT_0429 0.31 -0.4

Or see this region's nucleotide sequence