Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0426

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0424 and EX28DRAFT_0425 are separated by 157 nucleotidesEX28DRAFT_0425 and EX28DRAFT_0426 are separated by 167 nucleotidesEX28DRAFT_0426 and EX28DRAFT_0427 are separated by 94 nucleotidesEX28DRAFT_0427 and EX28DRAFT_0428 are separated by 112 nucleotides EX28DRAFT_0424: EX28DRAFT_0424 - Uncharacterized membrane-associated protein, at 403,938 to 404,510 _0424 EX28DRAFT_0425: EX28DRAFT_0425 - Protein of unknown function (DUF1282), at 404,668 to 405,255 _0425 EX28DRAFT_0426: EX28DRAFT_0426 - D-alanyl-D-alanine carboxypeptidase, at 405,423 to 406,346 _0426 EX28DRAFT_0427: EX28DRAFT_0427 - Sortase and related acyltransferases, at 406,441 to 406,995 _0427 EX28DRAFT_0428: EX28DRAFT_0428 - FAD/FMN-containing dehydrogenases, at 407,108 to 408,856 _0428 Position (kb) 405 406 407Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 404.492 kb on + strandat 404.493 kb on - strandat 404.511 kb on + strandat 404.511 kb on + strandat 404.511 kb on + strandat 404.523 kb on - strandat 404.523 kb on - strandat 404.546 kb on - strandat 404.551 kb on + strandat 404.551 kb on + strandat 404.551 kb on + strandat 404.551 kb on + strandat 404.552 kb on - strandat 404.552 kb on - strandat 404.553 kb on + strandat 404.553 kb on + strandat 404.553 kb on + strandat 404.554 kb on - strandat 404.554 kb on - strandat 404.625 kb on + strandat 404.625 kb on + strandat 404.627 kb on + strandat 404.627 kb on + strandat 404.627 kb on + strandat 404.628 kb on - strandat 404.628 kb on - strandat 404.628 kb on - strandat 404.631 kb on + strandat 404.632 kb on - strandat 404.632 kb on - strandat 404.792 kb on + strand, within EX28DRAFT_0425at 404.792 kb on + strand, within EX28DRAFT_0425at 405.023 kb on + strand, within EX28DRAFT_0425at 405.078 kb on + strand, within EX28DRAFT_0425at 405.079 kb on - strand, within EX28DRAFT_0425at 405.079 kb on - strand, within EX28DRAFT_0425at 405.091 kb on + strand, within EX28DRAFT_0425at 405.092 kb on - strand, within EX28DRAFT_0425at 405.092 kb on - strand, within EX28DRAFT_0425at 405.109 kb on + strand, within EX28DRAFT_0425at 405.142 kb on - strand, within EX28DRAFT_0425at 405.276 kb on - strandat 405.383 kb on + strandat 405.403 kb on + strandat 405.404 kb on - strandat 405.450 kb on - strandat 405.578 kb on + strand, within EX28DRAFT_0426at 405.588 kb on + strand, within EX28DRAFT_0426at 405.589 kb on - strand, within EX28DRAFT_0426at 405.637 kb on + strand, within EX28DRAFT_0426at 405.730 kb on - strand, within EX28DRAFT_0426at 405.906 kb on + strand, within EX28DRAFT_0426at 405.907 kb on - strand, within EX28DRAFT_0426at 406.052 kb on + strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.053 kb on - strand, within EX28DRAFT_0426at 406.074 kb on - strand, within EX28DRAFT_0426at 406.084 kb on + strand, within EX28DRAFT_0426at 406.086 kb on + strand, within EX28DRAFT_0426at 406.176 kb on - strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.215 kb on + strand, within EX28DRAFT_0426at 406.216 kb on - strand, within EX28DRAFT_0426at 406.247 kb on + strand, within EX28DRAFT_0426at 406.248 kb on - strand, within EX28DRAFT_0426at 406.300 kb on - strandat 406.300 kb on - strandat 406.485 kb on + strandat 406.515 kb on + strand, within EX28DRAFT_0427at 406.516 kb on - strand, within EX28DRAFT_0427at 406.516 kb on - strand, within EX28DRAFT_0427at 406.518 kb on - strand, within EX28DRAFT_0427at 406.518 kb on - strand, within EX28DRAFT_0427at 406.523 kb on - strand, within EX28DRAFT_0427at 406.563 kb on + strand, within EX28DRAFT_0427at 406.564 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.588 kb on - strand, within EX28DRAFT_0427at 406.707 kb on - strand, within EX28DRAFT_0427at 406.725 kb on + strand, within EX28DRAFT_0427at 406.837 kb on - strand, within EX28DRAFT_0427at 406.861 kb on - strand, within EX28DRAFT_0427at 406.910 kb on + strand, within EX28DRAFT_0427at 406.910 kb on + strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 406.911 kb on - strand, within EX28DRAFT_0427at 407.016 kb on + strandat 407.017 kb on - strandat 407.017 kb on - strandat 407.206 kb on + strandat 407.234 kb on - strandat 407.269 kb on + strandat 407.270 kb on - strandat 407.270 kb on - strandat 407.284 kb on - strand, within EX28DRAFT_0428

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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404,492 + -0.8
404,493 - +0.1
404,511 + -0.4
404,511 + +0.2
404,511 + -2.5
404,523 - -3.2
404,523 - +0.1
404,546 - +0.5
404,551 + +0.1
404,551 + +1.0
404,551 + -2.3
404,551 + +1.7
404,552 - +1.9
404,552 - -1.3
404,553 + +0.5
404,553 + -1.6
404,553 + +0.4
404,554 - +0.6
404,554 - -0.3
404,625 + -0.7
404,625 + +0.6
404,627 + +0.5
404,627 + -4.2
404,627 + +0.5
404,628 - -1.5
404,628 - -0.5
404,628 - +1.9
404,631 + +0.3
404,632 - +0.3
404,632 - -2.0
404,792 + EX28DRAFT_0425 0.21 +0.9
404,792 + EX28DRAFT_0425 0.21 -0.1
405,023 + EX28DRAFT_0425 0.60 +0.2
405,078 + EX28DRAFT_0425 0.70 -1.8
405,079 - EX28DRAFT_0425 0.70 +1.5
405,079 - EX28DRAFT_0425 0.70 -2.1
405,091 + EX28DRAFT_0425 0.72 +3.1
405,092 - EX28DRAFT_0425 0.72 +1.1
405,092 - EX28DRAFT_0425 0.72 +1.4
405,109 + EX28DRAFT_0425 0.75 -2.0
405,142 - EX28DRAFT_0425 0.81 -0.9
405,276 - +1.1
405,383 + +0.9
405,403 + +0.5
405,404 - +0.2
405,450 - +0.3
405,578 + EX28DRAFT_0426 0.17 -1.4
405,588 + EX28DRAFT_0426 0.18 +0.1
405,589 - EX28DRAFT_0426 0.18 +0.1
405,637 + EX28DRAFT_0426 0.23 -0.1
405,730 - EX28DRAFT_0426 0.33 +0.3
405,906 + EX28DRAFT_0426 0.52 +1.1
405,907 - EX28DRAFT_0426 0.52 -0.4
406,052 + EX28DRAFT_0426 0.68 -2.5
406,053 - EX28DRAFT_0426 0.68 -1.6
406,053 - EX28DRAFT_0426 0.68 +0.9
406,053 - EX28DRAFT_0426 0.68 +0.2
406,053 - EX28DRAFT_0426 0.68 +0.3
406,053 - EX28DRAFT_0426 0.68 -1.4
406,053 - EX28DRAFT_0426 0.68 -2.6
406,074 - EX28DRAFT_0426 0.70 +1.1
406,084 + EX28DRAFT_0426 0.72 +0.1
406,086 + EX28DRAFT_0426 0.72 -0.3
406,176 - EX28DRAFT_0426 0.81 -1.5
406,215 + EX28DRAFT_0426 0.86 -0.1
406,215 + EX28DRAFT_0426 0.86 -0.4
406,215 + EX28DRAFT_0426 0.86 -3.6
406,215 + EX28DRAFT_0426 0.86 +0.5
406,215 + EX28DRAFT_0426 0.86 +2.6
406,216 - EX28DRAFT_0426 0.86 +2.2
406,247 + EX28DRAFT_0426 0.89 -1.3
406,248 - EX28DRAFT_0426 0.89 -4.0
406,300 - -0.4
406,300 - +0.7
406,485 + -2.4
406,515 + EX28DRAFT_0427 0.13 -0.8
406,516 - EX28DRAFT_0427 0.14 -1.5
406,516 - EX28DRAFT_0427 0.14 +2.2
406,518 - EX28DRAFT_0427 0.14 +0.7
406,518 - EX28DRAFT_0427 0.14 +2.1
406,523 - EX28DRAFT_0427 0.15 +1.2
406,563 + EX28DRAFT_0427 0.22 -1.3
406,564 - EX28DRAFT_0427 0.22 +2.2
406,588 - EX28DRAFT_0427 0.26 +1.4
406,588 - EX28DRAFT_0427 0.26 -2.3
406,588 - EX28DRAFT_0427 0.26 -3.6
406,588 - EX28DRAFT_0427 0.26 -0.5
406,707 - EX28DRAFT_0427 0.48 +0.1
406,725 + EX28DRAFT_0427 0.51 -1.4
406,837 - EX28DRAFT_0427 0.71 -1.5
406,861 - EX28DRAFT_0427 0.76 -3.1
406,910 + EX28DRAFT_0427 0.85 -2.5
406,910 + EX28DRAFT_0427 0.85 -1.6
406,911 - EX28DRAFT_0427 0.85 +0.8
406,911 - EX28DRAFT_0427 0.85 +0.7
406,911 - EX28DRAFT_0427 0.85 +2.4
406,911 - EX28DRAFT_0427 0.85 +1.4
406,911 - EX28DRAFT_0427 0.85 -0.7
407,016 + +1.2
407,017 - +0.7
407,017 - -1.5
407,206 + -0.6
407,234 - -0.6
407,269 + -0.2
407,270 - -0.3
407,270 - +0.7
407,284 - EX28DRAFT_0428 0.10 +0.1

Or see this region's nucleotide sequence