Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0419

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0418 and EX28DRAFT_0419 are separated by 166 nucleotidesEX28DRAFT_0419 and EX28DRAFT_0420 are separated by 137 nucleotides EX28DRAFT_0418: EX28DRAFT_0418 - Carbohydrate-selective porin, at 395,549 to 396,895 _0418 EX28DRAFT_0419: EX28DRAFT_0419 - transcriptional antiterminator, BglG family, at 397,062 to 397,895 _0419 EX28DRAFT_0420: EX28DRAFT_0420 - PTS system, beta-glucoside-specific IIABC component, at 398,033 to 399,886 _0420 Position (kb) 397 398Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 396.285 kb on + strand, within EX28DRAFT_0418at 396.286 kb on - strand, within EX28DRAFT_0418at 396.286 kb on - strand, within EX28DRAFT_0418at 396.338 kb on + strand, within EX28DRAFT_0418at 396.341 kb on - strand, within EX28DRAFT_0418at 396.384 kb on - strand, within EX28DRAFT_0418at 396.458 kb on + strand, within EX28DRAFT_0418at 396.482 kb on - strand, within EX28DRAFT_0418at 396.553 kb on + strand, within EX28DRAFT_0418at 396.553 kb on + strand, within EX28DRAFT_0418at 396.553 kb on + strand, within EX28DRAFT_0418at 396.557 kb on + strand, within EX28DRAFT_0418at 396.557 kb on + strand, within EX28DRAFT_0418at 396.557 kb on + strand, within EX28DRAFT_0418at 396.557 kb on + strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.559 kb on + strand, within EX28DRAFT_0418at 396.560 kb on - strand, within EX28DRAFT_0418at 396.560 kb on - strand, within EX28DRAFT_0418at 396.653 kb on - strand, within EX28DRAFT_0418at 396.653 kb on - strand, within EX28DRAFT_0418at 396.666 kb on - strand, within EX28DRAFT_0418at 396.713 kb on + strand, within EX28DRAFT_0418at 396.714 kb on - strand, within EX28DRAFT_0418at 396.904 kb on + strandat 396.967 kb on + strandat 396.997 kb on - strandat 396.997 kb on - strandat 397.078 kb on + strandat 397.085 kb on + strandat 397.211 kb on - strand, within EX28DRAFT_0419at 397.338 kb on + strand, within EX28DRAFT_0419at 397.338 kb on + strand, within EX28DRAFT_0419at 397.339 kb on - strand, within EX28DRAFT_0419at 397.339 kb on - strand, within EX28DRAFT_0419at 397.339 kb on - strand, within EX28DRAFT_0419at 397.340 kb on + strand, within EX28DRAFT_0419at 397.341 kb on - strand, within EX28DRAFT_0419at 397.362 kb on + strand, within EX28DRAFT_0419at 397.362 kb on + strand, within EX28DRAFT_0419at 397.425 kb on - strand, within EX28DRAFT_0419at 397.620 kb on + strand, within EX28DRAFT_0419at 397.621 kb on - strand, within EX28DRAFT_0419at 397.638 kb on + strand, within EX28DRAFT_0419at 397.638 kb on + strand, within EX28DRAFT_0419at 397.659 kb on + strand, within EX28DRAFT_0419at 397.764 kb on + strand, within EX28DRAFT_0419at 397.765 kb on - strand, within EX28DRAFT_0419at 397.847 kb on + strandat 397.847 kb on + strandat 397.847 kb on + strandat 397.848 kb on - strandat 397.848 kb on - strandat 397.865 kb on + strandat 397.866 kb on - strandat 397.984 kb on + strandat 397.985 kb on - strandat 397.985 kb on - strandat 397.987 kb on - strandat 398.104 kb on - strandat 398.104 kb on - strandat 398.459 kb on + strand, within EX28DRAFT_0420at 398.460 kb on - strand, within EX28DRAFT_0420at 398.555 kb on - strand, within EX28DRAFT_0420at 398.555 kb on - strand, within EX28DRAFT_0420at 398.557 kb on + strand, within EX28DRAFT_0420at 398.671 kb on + strand, within EX28DRAFT_0420at 398.676 kb on - strand, within EX28DRAFT_0420at 398.878 kb on + strand, within EX28DRAFT_0420at 398.882 kb on + strand, within EX28DRAFT_0420at 398.882 kb on + strand, within EX28DRAFT_0420at 398.883 kb on - strand, within EX28DRAFT_0420

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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396,285 + EX28DRAFT_0418 0.55 +0.8
396,286 - EX28DRAFT_0418 0.55 +1.4
396,286 - EX28DRAFT_0418 0.55 -2.4
396,338 + EX28DRAFT_0418 0.59 -1.6
396,341 - EX28DRAFT_0418 0.59 +0.2
396,384 - EX28DRAFT_0418 0.62 -1.8
396,458 + EX28DRAFT_0418 0.67 -0.5
396,482 - EX28DRAFT_0418 0.69 +1.0
396,553 + EX28DRAFT_0418 0.75 +0.3
396,553 + EX28DRAFT_0418 0.75 -0.1
396,553 + EX28DRAFT_0418 0.75 +0.4
396,557 + EX28DRAFT_0418 0.75 +2.4
396,557 + EX28DRAFT_0418 0.75 -0.2
396,557 + EX28DRAFT_0418 0.75 -0.2
396,557 + EX28DRAFT_0418 0.75 -0.0
396,558 - EX28DRAFT_0418 0.75 -0.8
396,558 - EX28DRAFT_0418 0.75 +2.0
396,558 - EX28DRAFT_0418 0.75 -2.5
396,558 - EX28DRAFT_0418 0.75 -1.5
396,558 - EX28DRAFT_0418 0.75 -0.5
396,558 - EX28DRAFT_0418 0.75 -1.7
396,558 - EX28DRAFT_0418 0.75 -1.0
396,559 + EX28DRAFT_0418 0.75 -1.5
396,560 - EX28DRAFT_0418 0.75 +2.6
396,560 - EX28DRAFT_0418 0.75 +1.3
396,653 - EX28DRAFT_0418 0.82 -1.3
396,653 - EX28DRAFT_0418 0.82 -0.4
396,666 - EX28DRAFT_0418 0.83 -0.3
396,713 + EX28DRAFT_0418 0.86 -2.5
396,714 - EX28DRAFT_0418 0.86 +1.0
396,904 + +0.6
396,967 + -1.4
396,997 - -0.1
396,997 - +1.0
397,078 + -1.4
397,085 + +1.2
397,211 - EX28DRAFT_0419 0.18 -2.7
397,338 + EX28DRAFT_0419 0.33 -0.4
397,338 + EX28DRAFT_0419 0.33 +0.0
397,339 - EX28DRAFT_0419 0.33 -0.3
397,339 - EX28DRAFT_0419 0.33 -0.5
397,339 - EX28DRAFT_0419 0.33 +0.9
397,340 + EX28DRAFT_0419 0.33 -1.1
397,341 - EX28DRAFT_0419 0.33 +2.4
397,362 + EX28DRAFT_0419 0.36 -3.5
397,362 + EX28DRAFT_0419 0.36 -3.8
397,425 - EX28DRAFT_0419 0.44 +1.5
397,620 + EX28DRAFT_0419 0.67 +0.9
397,621 - EX28DRAFT_0419 0.67 +0.1
397,638 + EX28DRAFT_0419 0.69 +0.9
397,638 + EX28DRAFT_0419 0.69 -0.7
397,659 + EX28DRAFT_0419 0.72 -0.0
397,764 + EX28DRAFT_0419 0.84 -0.2
397,765 - EX28DRAFT_0419 0.84 -1.2
397,847 + +0.0
397,847 + -0.2
397,847 + +2.2
397,848 - +0.8
397,848 - -2.9
397,865 + +0.4
397,866 - -1.5
397,984 + -0.5
397,985 - -1.2
397,985 - -1.5
397,987 - -1.2
398,104 - -0.0
398,104 - -0.6
398,459 + EX28DRAFT_0420 0.23 +0.5
398,460 - EX28DRAFT_0420 0.23 -0.5
398,555 - EX28DRAFT_0420 0.28 -0.7
398,555 - EX28DRAFT_0420 0.28 -1.6
398,557 + EX28DRAFT_0420 0.28 -0.6
398,671 + EX28DRAFT_0420 0.34 +0.1
398,676 - EX28DRAFT_0420 0.35 -0.3
398,878 + EX28DRAFT_0420 0.46 -3.0
398,882 + EX28DRAFT_0420 0.46 -0.8
398,882 + EX28DRAFT_0420 0.46 -0.9
398,883 - EX28DRAFT_0420 0.46 -2.7

Or see this region's nucleotide sequence