Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0401 and EX28DRAFT_0402 are separated by 111 nucleotides EX28DRAFT_0402 and EX28DRAFT_0403 are separated by 138 nucleotides
EX28DRAFT_0401: EX28DRAFT_0401 - Outer membrane receptor for ferrienterochelin and colicins, at 376,759 to 378,729
_0401
EX28DRAFT_0402: EX28DRAFT_0402 - S-formylglutathione hydrolase, at 378,841 to 379,668
_0402
EX28DRAFT_0403: EX28DRAFT_0403 - Protein of unknown function (DUF1228), at 379,807 to 380,955
_0403
Position (kb) 378
379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 377.918 kb on + strand, within EX28DRAFT_0401 at 377.919 kb on + strand, within EX28DRAFT_0401 at 377.919 kb on + strand, within EX28DRAFT_0401 at 377.920 kb on - strand, within EX28DRAFT_0401 at 377.960 kb on - strand, within EX28DRAFT_0401 at 378.133 kb on + strand, within EX28DRAFT_0401 at 378.195 kb on + strand, within EX28DRAFT_0401 at 378.259 kb on - strand, within EX28DRAFT_0401 at 378.262 kb on + strand, within EX28DRAFT_0401 at 378.262 kb on + strand, within EX28DRAFT_0401 at 378.263 kb on - strand, within EX28DRAFT_0401 at 378.263 kb on - strand, within EX28DRAFT_0401 at 378.292 kb on - strand, within EX28DRAFT_0401 at 378.304 kb on + strand, within EX28DRAFT_0401 at 378.304 kb on + strand, within EX28DRAFT_0401 at 378.304 kb on + strand, within EX28DRAFT_0401 at 378.304 kb on + strand, within EX28DRAFT_0401 at 378.388 kb on + strand, within EX28DRAFT_0401 at 378.394 kb on + strand, within EX28DRAFT_0401 at 378.395 kb on - strand, within EX28DRAFT_0401 at 378.506 kb on - strand, within EX28DRAFT_0401 at 378.520 kb on + strand, within EX28DRAFT_0401 at 378.521 kb on - strand, within EX28DRAFT_0401 at 378.606 kb on - strand at 378.673 kb on + strand at 378.679 kb on + strand at 378.719 kb on - strand at 378.720 kb on + strand at 378.720 kb on + strand at 378.721 kb on - strand at 378.760 kb on + strand at 378.760 kb on + strand at 378.760 kb on + strand at 378.760 kb on + strand at 378.761 kb on - strand at 378.761 kb on - strand at 378.885 kb on + strand at 378.902 kb on + strand at 378.902 kb on + strand at 378.903 kb on - strand at 378.903 kb on - strand at 378.906 kb on - strand at 378.906 kb on - strand at 379.319 kb on + strand, within EX28DRAFT_0402 at 379.320 kb on - strand, within EX28DRAFT_0402 at 379.325 kb on + strand, within EX28DRAFT_0402 at 379.325 kb on + strand, within EX28DRAFT_0402 at 379.325 kb on + strand, within EX28DRAFT_0402 at 379.326 kb on - strand, within EX28DRAFT_0402 at 379.326 kb on - strand, within EX28DRAFT_0402 at 379.326 kb on - strand, within EX28DRAFT_0402 at 379.458 kb on + strand, within EX28DRAFT_0402 at 379.700 kb on - strand at 379.708 kb on + strand at 379.709 kb on - strand at 379.709 kb on - strand at 379.712 kb on - strand at 379.712 kb on - strand at 379.712 kb on - strand at 379.736 kb on + strand at 379.819 kb on - strand at 379.819 kb on - strand at 379.878 kb on + strand at 379.918 kb on - strand at 379.954 kb on + strand, within EX28DRAFT_0403 at 379.955 kb on - strand, within EX28DRAFT_0403 at 379.955 kb on - strand, within EX28DRAFT_0403 at 380.251 kb on + strand, within EX28DRAFT_0403 at 380.252 kb on - strand, within EX28DRAFT_0403 at 380.254 kb on - strand, within EX28DRAFT_0403 at 380.319 kb on - strand, within EX28DRAFT_0403 at 380.319 kb on - strand, within EX28DRAFT_0403 at 380.408 kb on + strand, within EX28DRAFT_0403 at 380.428 kb on + strand, within EX28DRAFT_0403 at 380.450 kb on - strand, within EX28DRAFT_0403
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 377,918 + EX28DRAFT_0401 0.59 -0.5 377,919 + EX28DRAFT_0401 0.59 +0.9 377,919 + EX28DRAFT_0401 0.59 +3.3 377,920 - EX28DRAFT_0401 0.59 +1.1 377,960 - EX28DRAFT_0401 0.61 +0.5 378,133 + EX28DRAFT_0401 0.70 -0.5 378,195 + EX28DRAFT_0401 0.73 -0.1 378,259 - EX28DRAFT_0401 0.76 +1.0 378,262 + EX28DRAFT_0401 0.76 -1.6 378,262 + EX28DRAFT_0401 0.76 +0.8 378,263 - EX28DRAFT_0401 0.76 +1.2 378,263 - EX28DRAFT_0401 0.76 +1.5 378,292 - EX28DRAFT_0401 0.78 +1.1 378,304 + EX28DRAFT_0401 0.78 -2.2 378,304 + EX28DRAFT_0401 0.78 +1.1 378,304 + EX28DRAFT_0401 0.78 +0.8 378,304 + EX28DRAFT_0401 0.78 +0.1 378,388 + EX28DRAFT_0401 0.83 -0.5 378,394 + EX28DRAFT_0401 0.83 -0.5 378,395 - EX28DRAFT_0401 0.83 +0.3 378,506 - EX28DRAFT_0401 0.89 +4.9 378,520 + EX28DRAFT_0401 0.89 -2.3 378,521 - EX28DRAFT_0401 0.89 +0.4 378,606 - -0.0 378,673 + -0.5 378,679 + +0.5 378,719 - +0.5 378,720 + -2.2 378,720 + -2.5 378,721 - -0.3 378,760 + +1.1 378,760 + +1.0 378,760 + +0.6 378,760 + +0.2 378,761 - +1.5 378,761 - -0.2 378,885 + +0.9 378,902 + +2.2 378,902 + +0.2 378,903 - +0.6 378,903 - -2.2 378,906 - +1.3 378,906 - +2.1 379,319 + EX28DRAFT_0402 0.58 -1.5 379,320 - EX28DRAFT_0402 0.58 +1.0 379,325 + EX28DRAFT_0402 0.58 -0.2 379,325 + EX28DRAFT_0402 0.58 +0.1 379,325 + EX28DRAFT_0402 0.58 -1.8 379,326 - EX28DRAFT_0402 0.59 +0.1 379,326 - EX28DRAFT_0402 0.59 -2.9 379,326 - EX28DRAFT_0402 0.59 -1.2 379,458 + EX28DRAFT_0402 0.75 -0.9 379,700 - +0.7 379,708 + -0.3 379,709 - +2.1 379,709 - -1.6 379,712 - -0.5 379,712 - -1.1 379,712 - +0.3 379,736 + +0.2 379,819 - -1.8 379,819 - -0.3 379,878 + -0.7 379,918 - +0.0 379,954 + EX28DRAFT_0403 0.13 -1.4 379,955 - EX28DRAFT_0403 0.13 +1.5 379,955 - EX28DRAFT_0403 0.13 -0.9 380,251 + EX28DRAFT_0403 0.39 -1.3 380,252 - EX28DRAFT_0403 0.39 +0.9 380,254 - EX28DRAFT_0403 0.39 +0.6 380,319 - EX28DRAFT_0403 0.45 -3.4 380,319 - EX28DRAFT_0403 0.45 +0.4 380,408 + EX28DRAFT_0403 0.52 -0.5 380,428 + EX28DRAFT_0403 0.54 -0.7 380,450 - EX28DRAFT_0403 0.56 -2.6
Or see this region's nucleotide sequence