Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0325 and EX28DRAFT_0326 are separated by 6 nucleotides EX28DRAFT_0326 and EX28DRAFT_0327 are separated by 7 nucleotides EX28DRAFT_0327 and EX28DRAFT_0328 overlap by 4 nucleotides EX28DRAFT_0328 and EX28DRAFT_0329 are separated by 13 nucleotides
EX28DRAFT_0325: EX28DRAFT_0325 - NADH-quinone oxidoreductase, F subunit, at 286,140 to 287,477
_0325
EX28DRAFT_0326: EX28DRAFT_0326 - RNA, at 287,484 to 287,525
_0326
EX28DRAFT_0327: EX28DRAFT_0327 - NADH-quinone oxidoreductase, chain G, at 287,533 to 290,256
_0327
EX28DRAFT_0328: EX28DRAFT_0328 - NADH:ubiquinone oxidoreductase subunit 1 (chain H), at 290,253 to 291,230
_0328
EX28DRAFT_0329: EX28DRAFT_0329 - NADH-quinone oxidoreductase, chain I, at 291,244 to 291,786
_0329
Position (kb) 287
288
289
290
291 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 286.671 kb on + strand, within EX28DRAFT_0325 at 286.672 kb on - strand, within EX28DRAFT_0325 at 286.700 kb on + strand, within EX28DRAFT_0325 at 287.084 kb on + strand, within EX28DRAFT_0325 at 287.312 kb on - strand, within EX28DRAFT_0325 at 287.427 kb on - strand at 287.462 kb on + strand at 287.563 kb on + strand at 288.014 kb on - strand, within EX28DRAFT_0327 at 288.022 kb on + strand, within EX28DRAFT_0327 at 288.047 kb on + strand, within EX28DRAFT_0327 at 288.047 kb on + strand, within EX28DRAFT_0327 at 288.347 kb on - strand, within EX28DRAFT_0327 at 288.646 kb on + strand, within EX28DRAFT_0327 at 289.442 kb on - strand, within EX28DRAFT_0327 at 289.444 kb on + strand, within EX28DRAFT_0327 at 289.877 kb on + strand, within EX28DRAFT_0327 at 290.044 kb on + strand at 290.045 kb on - strand at 290.110 kb on - strand at 290.110 kb on - strand at 290.110 kb on - strand at 290.190 kb on + strand at 290.843 kb on + strand, within EX28DRAFT_0328 at 291.142 kb on + strand at 291.237 kb on - strand at 291.238 kb on + strand at 291.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 286,671 + EX28DRAFT_0325 0.40 -4.6 286,672 - EX28DRAFT_0325 0.40 -3.0 286,700 + EX28DRAFT_0325 0.42 -3.1 287,084 + EX28DRAFT_0325 0.71 -3.8 287,312 - EX28DRAFT_0325 0.88 -2.0 287,427 - -2.6 287,462 + -0.8 287,563 + +0.7 288,014 - EX28DRAFT_0327 0.18 -1.6 288,022 + EX28DRAFT_0327 0.18 -4.0 288,047 + EX28DRAFT_0327 0.19 -4.1 288,047 + EX28DRAFT_0327 0.19 -1.5 288,347 - EX28DRAFT_0327 0.30 -4.9 288,646 + EX28DRAFT_0327 0.41 -2.6 289,442 - EX28DRAFT_0327 0.70 -2.4 289,444 + EX28DRAFT_0327 0.70 -3.9 289,877 + EX28DRAFT_0327 0.86 -2.8 290,044 + +0.2 290,045 - -3.5 290,110 - -1.0 290,110 - +0.6 290,110 - -3.0 290,190 + -3.8 290,843 + EX28DRAFT_0328 0.60 -3.1 291,142 + -4.1 291,237 - -4.7 291,238 + -1.8 291,251 + -2.2
Or see this region's nucleotide sequence