Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0317

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0315 and EX28DRAFT_0316 are separated by 11 nucleotidesEX28DRAFT_0316 and EX28DRAFT_0317 are separated by 75 nucleotidesEX28DRAFT_0317 and EX28DRAFT_0318 are separated by 81 nucleotidesEX28DRAFT_0318 and EX28DRAFT_0319 are separated by 94 nucleotides EX28DRAFT_0315: EX28DRAFT_0315 - Uncharacterized conserved protein, at 275,047 to 275,541 _0315 EX28DRAFT_0316: EX28DRAFT_0316 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 275,553 to 276,212 _0316 EX28DRAFT_0317: EX28DRAFT_0317 - Di- and tricarboxylate transporters, at 276,288 to 278,120 _0317 EX28DRAFT_0318: EX28DRAFT_0318 - Predicted hydrolases of HD superfamily, at 278,202 to 278,801 _0318 EX28DRAFT_0319: EX28DRAFT_0319 - Aspartate/tyrosine/aromatic aminotransferase, at 278,896 to 280,110 _0319 Position (kb) 276 277 278 279Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 275.324 kb on + strand, within EX28DRAFT_0315at 275.324 kb on + strand, within EX28DRAFT_0315at 275.325 kb on - strand, within EX28DRAFT_0315at 275.362 kb on + strand, within EX28DRAFT_0315at 275.362 kb on + strand, within EX28DRAFT_0315at 275.362 kb on + strand, within EX28DRAFT_0315at 275.382 kb on + strand, within EX28DRAFT_0315at 275.397 kb on + strand, within EX28DRAFT_0315at 275.455 kb on + strand, within EX28DRAFT_0315at 275.455 kb on + strand, within EX28DRAFT_0315at 275.463 kb on + strand, within EX28DRAFT_0315at 275.463 kb on + strand, within EX28DRAFT_0315at 275.463 kb on + strand, within EX28DRAFT_0315at 275.464 kb on - strand, within EX28DRAFT_0315at 275.469 kb on - strand, within EX28DRAFT_0315at 275.504 kb on + strandat 275.504 kb on + strandat 275.532 kb on + strandat 275.561 kb on + strandat 275.562 kb on - strandat 275.868 kb on - strand, within EX28DRAFT_0316at 276.055 kb on + strand, within EX28DRAFT_0316at 276.190 kb on + strandat 276.191 kb on - strandat 276.210 kb on + strandat 276.210 kb on + strandat 276.211 kb on - strandat 276.453 kb on - strandat 276.479 kb on + strand, within EX28DRAFT_0317at 276.479 kb on + strand, within EX28DRAFT_0317at 276.480 kb on - strand, within EX28DRAFT_0317at 276.612 kb on - strand, within EX28DRAFT_0317at 276.643 kb on + strand, within EX28DRAFT_0317at 276.644 kb on - strand, within EX28DRAFT_0317at 276.745 kb on + strand, within EX28DRAFT_0317at 276.862 kb on - strand, within EX28DRAFT_0317at 276.862 kb on - strand, within EX28DRAFT_0317at 277.158 kb on - strand, within EX28DRAFT_0317at 277.619 kb on + strand, within EX28DRAFT_0317at 277.671 kb on + strand, within EX28DRAFT_0317at 277.673 kb on + strand, within EX28DRAFT_0317at 277.674 kb on - strand, within EX28DRAFT_0317at 277.803 kb on + strand, within EX28DRAFT_0317at 277.827 kb on - strand, within EX28DRAFT_0317at 277.853 kb on + strand, within EX28DRAFT_0317at 278.203 kb on + strandat 278.239 kb on - strandat 278.268 kb on - strand, within EX28DRAFT_0318at 278.273 kb on - strand, within EX28DRAFT_0318at 278.522 kb on + strand, within EX28DRAFT_0318at 278.522 kb on + strand, within EX28DRAFT_0318at 278.523 kb on - strand, within EX28DRAFT_0318at 278.523 kb on - strand, within EX28DRAFT_0318at 278.524 kb on + strand, within EX28DRAFT_0318at 278.603 kb on - strand, within EX28DRAFT_0318at 278.802 kb on - strandat 278.802 kb on - strandat 278.806 kb on + strandat 278.891 kb on + strandat 278.891 kb on + strandat 279.078 kb on + strand, within EX28DRAFT_0319at 279.111 kb on + strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.113 kb on + strand, within EX28DRAFT_0319at 279.113 kb on + strand, within EX28DRAFT_0319at 279.114 kb on - strand, within EX28DRAFT_0319

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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275,324 + EX28DRAFT_0315 0.56 +2.9
275,324 + EX28DRAFT_0315 0.56 +0.2
275,325 - EX28DRAFT_0315 0.56 +0.6
275,362 + EX28DRAFT_0315 0.64 +0.2
275,362 + EX28DRAFT_0315 0.64 -1.7
275,362 + EX28DRAFT_0315 0.64 +1.1
275,382 + EX28DRAFT_0315 0.68 -0.1
275,397 + EX28DRAFT_0315 0.71 -0.5
275,455 + EX28DRAFT_0315 0.82 -1.6
275,455 + EX28DRAFT_0315 0.82 -0.8
275,463 + EX28DRAFT_0315 0.84 +1.7
275,463 + EX28DRAFT_0315 0.84 -0.8
275,463 + EX28DRAFT_0315 0.84 -0.9
275,464 - EX28DRAFT_0315 0.84 +3.2
275,469 - EX28DRAFT_0315 0.85 +0.7
275,504 + +1.3
275,504 + +1.2
275,532 + -0.5
275,561 + +1.2
275,562 - +0.7
275,868 - EX28DRAFT_0316 0.48 +0.4
276,055 + EX28DRAFT_0316 0.76 +0.6
276,190 + -2.4
276,191 - -0.8
276,210 + -0.1
276,210 + +2.0
276,211 - -0.5
276,453 - -0.8
276,479 + EX28DRAFT_0317 0.10 +0.8
276,479 + EX28DRAFT_0317 0.10 -1.0
276,480 - EX28DRAFT_0317 0.10 +0.1
276,612 - EX28DRAFT_0317 0.18 -3.9
276,643 + EX28DRAFT_0317 0.19 +2.4
276,644 - EX28DRAFT_0317 0.19 +0.9
276,745 + EX28DRAFT_0317 0.25 -0.4
276,862 - EX28DRAFT_0317 0.31 -0.4
276,862 - EX28DRAFT_0317 0.31 -2.0
277,158 - EX28DRAFT_0317 0.47 -0.4
277,619 + EX28DRAFT_0317 0.73 -0.5
277,671 + EX28DRAFT_0317 0.75 +0.4
277,673 + EX28DRAFT_0317 0.76 -2.3
277,674 - EX28DRAFT_0317 0.76 -0.8
277,803 + EX28DRAFT_0317 0.83 -0.1
277,827 - EX28DRAFT_0317 0.84 +0.4
277,853 + EX28DRAFT_0317 0.85 -0.8
278,203 + -1.0
278,239 - +0.7
278,268 - EX28DRAFT_0318 0.11 +1.9
278,273 - EX28DRAFT_0318 0.12 +0.9
278,522 + EX28DRAFT_0318 0.53 -0.6
278,522 + EX28DRAFT_0318 0.53 +0.8
278,523 - EX28DRAFT_0318 0.54 -1.9
278,523 - EX28DRAFT_0318 0.54 +0.4
278,524 + EX28DRAFT_0318 0.54 +0.8
278,603 - EX28DRAFT_0318 0.67 +0.2
278,802 - -0.3
278,802 - +0.3
278,806 + -0.1
278,891 + -0.9
278,891 + +0.0
279,078 + EX28DRAFT_0319 0.15 -1.5
279,111 + EX28DRAFT_0319 0.18 -1.8
279,112 - EX28DRAFT_0319 0.18 +0.4
279,112 - EX28DRAFT_0319 0.18 -0.1
279,112 - EX28DRAFT_0319 0.18 -1.0
279,112 - EX28DRAFT_0319 0.18 +3.9
279,112 - EX28DRAFT_0319 0.18 +1.4
279,112 - EX28DRAFT_0319 0.18 +2.1
279,112 - EX28DRAFT_0319 0.18 +0.0
279,112 - EX28DRAFT_0319 0.18 -0.8
279,113 + EX28DRAFT_0319 0.18 +0.5
279,113 + EX28DRAFT_0319 0.18 -0.6
279,114 - EX28DRAFT_0319 0.18 -3.5

Or see this region's nucleotide sequence