Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0311 and EX28DRAFT_0312 are separated by 72 nucleotides EX28DRAFT_0312 and EX28DRAFT_0313 are separated by 76 nucleotides
EX28DRAFT_0311: EX28DRAFT_0311 - Transketolase, C-terminal subunit, at 269,715 to 270,668
_0311
EX28DRAFT_0312: EX28DRAFT_0312 - phosphate acetyltransferase, at 270,741 to 272,882
_0312
EX28DRAFT_0313: EX28DRAFT_0313 - acetate kinase, at 272,959 to 274,161
_0313
Position (kb) 270
271
272
273 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 269.770 kb on - strand at 269.903 kb on - strand, within EX28DRAFT_0311 at 269.966 kb on + strand, within EX28DRAFT_0311 at 269.967 kb on - strand, within EX28DRAFT_0311 at 270.011 kb on + strand, within EX28DRAFT_0311 at 270.011 kb on + strand, within EX28DRAFT_0311 at 270.024 kb on + strand, within EX28DRAFT_0311 at 270.046 kb on + strand, within EX28DRAFT_0311 at 270.047 kb on - strand, within EX28DRAFT_0311 at 270.095 kb on + strand, within EX28DRAFT_0311 at 270.096 kb on - strand, within EX28DRAFT_0311 at 270.213 kb on + strand, within EX28DRAFT_0311 at 270.312 kb on - strand, within EX28DRAFT_0311 at 270.314 kb on - strand, within EX28DRAFT_0311 at 270.314 kb on - strand, within EX28DRAFT_0311 at 270.447 kb on + strand, within EX28DRAFT_0311 at 270.491 kb on + strand, within EX28DRAFT_0311 at 270.492 kb on - strand, within EX28DRAFT_0311 at 270.742 kb on + strand at 270.742 kb on + strand at 271.081 kb on - strand, within EX28DRAFT_0312 at 271.484 kb on - strand, within EX28DRAFT_0312 at 271.619 kb on + strand, within EX28DRAFT_0312 at 272.603 kb on - strand, within EX28DRAFT_0312 at 272.868 kb on - strand at 272.868 kb on - strand at 272.871 kb on - strand at 273.212 kb on + strand, within EX28DRAFT_0313 at 273.212 kb on + strand, within EX28DRAFT_0313 at 273.284 kb on + strand, within EX28DRAFT_0313 at 273.285 kb on - strand, within EX28DRAFT_0313 at 273.299 kb on + strand, within EX28DRAFT_0313 at 273.481 kb on - strand, within EX28DRAFT_0313 at 273.599 kb on + strand, within EX28DRAFT_0313 at 273.599 kb on + strand, within EX28DRAFT_0313 at 273.600 kb on - strand, within EX28DRAFT_0313 at 273.678 kb on - strand, within EX28DRAFT_0313 at 273.678 kb on - strand, within EX28DRAFT_0313
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 269,770 - -2.6 269,903 - EX28DRAFT_0311 0.20 -1.5 269,966 + EX28DRAFT_0311 0.26 +0.1 269,967 - EX28DRAFT_0311 0.26 +0.7 270,011 + EX28DRAFT_0311 0.31 -1.6 270,011 + EX28DRAFT_0311 0.31 +0.3 270,024 + EX28DRAFT_0311 0.32 +0.5 270,046 + EX28DRAFT_0311 0.35 -1.0 270,047 - EX28DRAFT_0311 0.35 +1.6 270,095 + EX28DRAFT_0311 0.40 +0.2 270,096 - EX28DRAFT_0311 0.40 -2.7 270,213 + EX28DRAFT_0311 0.52 +0.4 270,312 - EX28DRAFT_0311 0.63 +0.9 270,314 - EX28DRAFT_0311 0.63 -0.8 270,314 - EX28DRAFT_0311 0.63 -0.2 270,447 + EX28DRAFT_0311 0.77 -2.6 270,491 + EX28DRAFT_0311 0.81 +0.2 270,492 - EX28DRAFT_0311 0.81 +0.2 270,742 + -1.2 270,742 + -0.5 271,081 - EX28DRAFT_0312 0.16 +0.6 271,484 - EX28DRAFT_0312 0.35 -2.1 271,619 + EX28DRAFT_0312 0.41 -1.4 272,603 - EX28DRAFT_0312 0.87 -3.8 272,868 - +1.8 272,868 - +1.2 272,871 - -0.4 273,212 + EX28DRAFT_0313 0.21 -2.5 273,212 + EX28DRAFT_0313 0.21 -0.6 273,284 + EX28DRAFT_0313 0.27 -2.5 273,285 - EX28DRAFT_0313 0.27 +2.2 273,299 + EX28DRAFT_0313 0.28 -0.8 273,481 - EX28DRAFT_0313 0.43 -0.4 273,599 + EX28DRAFT_0313 0.53 -2.1 273,599 + EX28DRAFT_0313 0.53 +0.2 273,600 - EX28DRAFT_0313 0.53 -1.3 273,678 - EX28DRAFT_0313 0.60 -2.0 273,678 - EX28DRAFT_0313 0.60 +1.2
Or see this region's nucleotide sequence