Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0296

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0295 and EX28DRAFT_0296 are separated by 88 nucleotidesEX28DRAFT_0296 and EX28DRAFT_0297 overlap by 4 nucleotidesEX28DRAFT_0297 and EX28DRAFT_0298 are separated by 8 nucleotides EX28DRAFT_0295: EX28DRAFT_0295 - lysine-arginine-ornithine-binding periplasmic protein, at 257,790 to 258,572 _0295 EX28DRAFT_0296: EX28DRAFT_0296 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 258,661 to 259,347 _0296 EX28DRAFT_0297: EX28DRAFT_0297 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 259,344 to 260,060 _0297 EX28DRAFT_0298: EX28DRAFT_0298 - ABC-type histidine transport system, ATPase component, at 260,069 to 260,842 _0298 Position (kb) 258 259 260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 257.667 kb on + strandat 257.667 kb on + strandat 257.699 kb on - strandat 257.733 kb on + strandat 257.733 kb on + strandat 257.734 kb on - strandat 257.895 kb on + strand, within EX28DRAFT_0295at 257.896 kb on - strand, within EX28DRAFT_0295at 257.896 kb on - strand, within EX28DRAFT_0295at 257.896 kb on - strand, within EX28DRAFT_0295at 257.990 kb on + strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.994 kb on + strand, within EX28DRAFT_0295at 257.995 kb on - strand, within EX28DRAFT_0295at 257.995 kb on - strand, within EX28DRAFT_0295at 257.995 kb on - strand, within EX28DRAFT_0295at 258.056 kb on + strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.290 kb on + strand, within EX28DRAFT_0295at 258.290 kb on + strand, within EX28DRAFT_0295at 258.294 kb on + strand, within EX28DRAFT_0295at 258.294 kb on + strand, within EX28DRAFT_0295at 258.294 kb on + strand, within EX28DRAFT_0295at 258.295 kb on - strand, within EX28DRAFT_0295at 258.387 kb on + strand, within EX28DRAFT_0295at 258.388 kb on - strand, within EX28DRAFT_0295at 258.407 kb on + strand, within EX28DRAFT_0295at 258.411 kb on - strand, within EX28DRAFT_0295at 258.411 kb on - strand, within EX28DRAFT_0295at 258.522 kb on + strandat 258.586 kb on + strandat 258.684 kb on + strandat 258.690 kb on - strandat 258.750 kb on - strand, within EX28DRAFT_0296at 258.787 kb on - strand, within EX28DRAFT_0296at 258.814 kb on + strand, within EX28DRAFT_0296at 258.814 kb on + strand, within EX28DRAFT_0296at 258.815 kb on - strand, within EX28DRAFT_0296at 258.816 kb on + strand, within EX28DRAFT_0296at 258.817 kb on - strand, within EX28DRAFT_0296at 258.862 kb on - strand, within EX28DRAFT_0296at 258.951 kb on + strand, within EX28DRAFT_0296at 258.952 kb on - strand, within EX28DRAFT_0296at 258.952 kb on - strand, within EX28DRAFT_0296at 258.952 kb on - strand, within EX28DRAFT_0296at 258.952 kb on - strand, within EX28DRAFT_0296at 259.007 kb on - strand, within EX28DRAFT_0296at 259.007 kb on - strand, within EX28DRAFT_0296at 259.057 kb on - strand, within EX28DRAFT_0296at 259.057 kb on - strand, within EX28DRAFT_0296at 259.191 kb on + strand, within EX28DRAFT_0296at 259.261 kb on + strand, within EX28DRAFT_0296at 259.261 kb on + strand, within EX28DRAFT_0296at 259.262 kb on - strand, within EX28DRAFT_0296at 259.534 kb on - strand, within EX28DRAFT_0297at 259.534 kb on - strand, within EX28DRAFT_0297at 259.557 kb on + strand, within EX28DRAFT_0297at 259.590 kb on + strand, within EX28DRAFT_0297at 259.590 kb on + strand, within EX28DRAFT_0297at 259.591 kb on - strand, within EX28DRAFT_0297at 259.591 kb on - strand, within EX28DRAFT_0297at 259.591 kb on - strand, within EX28DRAFT_0297at 259.592 kb on + strand, within EX28DRAFT_0297at 259.656 kb on - strand, within EX28DRAFT_0297at 259.689 kb on + strand, within EX28DRAFT_0297at 259.835 kb on + strand, within EX28DRAFT_0297at 259.919 kb on + strand, within EX28DRAFT_0297at 259.919 kb on + strand, within EX28DRAFT_0297at 259.920 kb on - strand, within EX28DRAFT_0297at 259.920 kb on - strand, within EX28DRAFT_0297at 259.920 kb on - strand, within EX28DRAFT_0297at 259.932 kb on + strand, within EX28DRAFT_0297at 259.933 kb on - strand, within EX28DRAFT_0297at 259.972 kb on - strand, within EX28DRAFT_0297at 259.975 kb on + strand, within EX28DRAFT_0297at 259.975 kb on + strand, within EX28DRAFT_0297at 259.976 kb on - strand, within EX28DRAFT_0297at 259.976 kb on - strand, within EX28DRAFT_0297at 259.986 kb on + strand, within EX28DRAFT_0297at 259.986 kb on + strand, within EX28DRAFT_0297at 259.986 kb on + strand, within EX28DRAFT_0297at 259.987 kb on - strand, within EX28DRAFT_0297at 259.987 kb on - strand, within EX28DRAFT_0297at 259.987 kb on - strand, within EX28DRAFT_0297at 260.010 kb on - strandat 260.036 kb on + strandat 260.038 kb on + strandat 260.039 kb on - strandat 260.086 kb on - strandat 260.173 kb on + strand, within EX28DRAFT_0298at 260.222 kb on - strand, within EX28DRAFT_0298at 260.273 kb on - strand, within EX28DRAFT_0298at 260.275 kb on + strand, within EX28DRAFT_0298

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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257,667 + -1.5
257,667 + +0.2
257,699 - -2.0
257,733 + -0.4
257,733 + -0.9
257,734 - +0.5
257,895 + EX28DRAFT_0295 0.13 +0.5
257,896 - EX28DRAFT_0295 0.14 -1.9
257,896 - EX28DRAFT_0295 0.14 +0.7
257,896 - EX28DRAFT_0295 0.14 -0.1
257,990 + EX28DRAFT_0295 0.26 -2.9
257,991 - EX28DRAFT_0295 0.26 -2.5
257,991 - EX28DRAFT_0295 0.26 +0.4
257,991 - EX28DRAFT_0295 0.26 -0.9
257,991 - EX28DRAFT_0295 0.26 +1.9
257,994 + EX28DRAFT_0295 0.26 -2.5
257,995 - EX28DRAFT_0295 0.26 -1.0
257,995 - EX28DRAFT_0295 0.26 +0.3
257,995 - EX28DRAFT_0295 0.26 -2.2
258,056 + EX28DRAFT_0295 0.34 +0.5
258,057 - EX28DRAFT_0295 0.34 -2.2
258,057 - EX28DRAFT_0295 0.34 -0.2
258,057 - EX28DRAFT_0295 0.34 -3.3
258,057 - EX28DRAFT_0295 0.34 +0.3
258,290 + EX28DRAFT_0295 0.64 +1.2
258,290 + EX28DRAFT_0295 0.64 -0.2
258,294 + EX28DRAFT_0295 0.64 +0.3
258,294 + EX28DRAFT_0295 0.64 +0.0
258,294 + EX28DRAFT_0295 0.64 -0.8
258,295 - EX28DRAFT_0295 0.64 -0.8
258,387 + EX28DRAFT_0295 0.76 +0.6
258,388 - EX28DRAFT_0295 0.76 -1.3
258,407 + EX28DRAFT_0295 0.79 +1.0
258,411 - EX28DRAFT_0295 0.79 +0.2
258,411 - EX28DRAFT_0295 0.79 +2.2
258,522 + -0.7
258,586 + -1.4
258,684 + -0.8
258,690 - -0.6
258,750 - EX28DRAFT_0296 0.13 -0.5
258,787 - EX28DRAFT_0296 0.18 +0.6
258,814 + EX28DRAFT_0296 0.22 -0.9
258,814 + EX28DRAFT_0296 0.22 -3.0
258,815 - EX28DRAFT_0296 0.22 -1.4
258,816 + EX28DRAFT_0296 0.23 -2.5
258,817 - EX28DRAFT_0296 0.23 +1.0
258,862 - EX28DRAFT_0296 0.29 -0.6
258,951 + EX28DRAFT_0296 0.42 -1.2
258,952 - EX28DRAFT_0296 0.42 +0.7
258,952 - EX28DRAFT_0296 0.42 -2.5
258,952 - EX28DRAFT_0296 0.42 +0.1
258,952 - EX28DRAFT_0296 0.42 +0.2
259,007 - EX28DRAFT_0296 0.50 -0.7
259,007 - EX28DRAFT_0296 0.50 -0.0
259,057 - EX28DRAFT_0296 0.58 -0.8
259,057 - EX28DRAFT_0296 0.58 +2.8
259,191 + EX28DRAFT_0296 0.77 +2.5
259,261 + EX28DRAFT_0296 0.87 +1.6
259,261 + EX28DRAFT_0296 0.87 -2.2
259,262 - EX28DRAFT_0296 0.87 -1.4
259,534 - EX28DRAFT_0297 0.26 -0.5
259,534 - EX28DRAFT_0297 0.26 +0.4
259,557 + EX28DRAFT_0297 0.30 -0.1
259,590 + EX28DRAFT_0297 0.34 -0.9
259,590 + EX28DRAFT_0297 0.34 -0.8
259,591 - EX28DRAFT_0297 0.34 +0.9
259,591 - EX28DRAFT_0297 0.34 +0.6
259,591 - EX28DRAFT_0297 0.34 +0.8
259,592 + EX28DRAFT_0297 0.35 +1.5
259,656 - EX28DRAFT_0297 0.44 -1.1
259,689 + EX28DRAFT_0297 0.48 +0.6
259,835 + EX28DRAFT_0297 0.68 -0.6
259,919 + EX28DRAFT_0297 0.80 -2.0
259,919 + EX28DRAFT_0297 0.80 +1.5
259,920 - EX28DRAFT_0297 0.80 +0.8
259,920 - EX28DRAFT_0297 0.80 +1.4
259,920 - EX28DRAFT_0297 0.80 +0.6
259,932 + EX28DRAFT_0297 0.82 +2.4
259,933 - EX28DRAFT_0297 0.82 -0.2
259,972 - EX28DRAFT_0297 0.88 -1.5
259,975 + EX28DRAFT_0297 0.88 +0.0
259,975 + EX28DRAFT_0297 0.88 -0.9
259,976 - EX28DRAFT_0297 0.88 -1.6
259,976 - EX28DRAFT_0297 0.88 -0.5
259,986 + EX28DRAFT_0297 0.90 -3.8
259,986 + EX28DRAFT_0297 0.90 -0.4
259,986 + EX28DRAFT_0297 0.90 -2.0
259,987 - EX28DRAFT_0297 0.90 -2.7
259,987 - EX28DRAFT_0297 0.90 -1.2
259,987 - EX28DRAFT_0297 0.90 +1.4
260,010 - +2.0
260,036 + -0.3
260,038 + +0.2
260,039 - +0.1
260,086 - -0.2
260,173 + EX28DRAFT_0298 0.13 +1.1
260,222 - EX28DRAFT_0298 0.20 +0.6
260,273 - EX28DRAFT_0298 0.26 -1.5
260,275 + EX28DRAFT_0298 0.27 +1.2

Or see this region's nucleotide sequence