Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0174

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0173 and EX28DRAFT_0174 overlap by 1 nucleotidesEX28DRAFT_0174 and EX28DRAFT_0175 are separated by 3 nucleotides EX28DRAFT_0173: EX28DRAFT_0173 - Leucyl aminopeptidase, at 122,496 to 123,914 _0173 EX28DRAFT_0174: EX28DRAFT_0174 - Asparaginase, at 123,914 to 124,870 _0174 EX28DRAFT_0175: EX28DRAFT_0175 - phosphotransferase system, cellobiose specific, IIC component, at 124,874 to 126,193 _0175 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 123.130 kb on + strand, within EX28DRAFT_0173at 123.131 kb on - strand, within EX28DRAFT_0173at 123.142 kb on + strand, within EX28DRAFT_0173at 123.142 kb on + strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.188 kb on + strand, within EX28DRAFT_0173at 123.188 kb on + strand, within EX28DRAFT_0173at 123.205 kb on + strand, within EX28DRAFT_0173at 123.205 kb on + strand, within EX28DRAFT_0173at 123.206 kb on - strand, within EX28DRAFT_0173at 123.206 kb on - strand, within EX28DRAFT_0173at 123.648 kb on + strand, within EX28DRAFT_0173at 123.839 kb on + strandat 123.896 kb on + strandat 123.896 kb on + strandat 123.897 kb on - strandat 123.905 kb on - strandat 123.905 kb on - strandat 123.908 kb on + strandat 123.908 kb on + strandat 123.908 kb on + strandat 123.951 kb on + strandat 123.952 kb on - strandat 123.985 kb on - strandat 124.113 kb on - strand, within EX28DRAFT_0174at 124.202 kb on - strand, within EX28DRAFT_0174at 124.302 kb on + strand, within EX28DRAFT_0174at 124.510 kb on + strand, within EX28DRAFT_0174at 124.511 kb on - strand, within EX28DRAFT_0174at 124.511 kb on - strand, within EX28DRAFT_0174at 124.511 kb on - strand, within EX28DRAFT_0174at 124.511 kb on - strand, within EX28DRAFT_0174at 124.578 kb on + strand, within EX28DRAFT_0174at 124.660 kb on + strand, within EX28DRAFT_0174at 124.735 kb on + strand, within EX28DRAFT_0174at 124.875 kb on + strandat 124.876 kb on - strandat 124.952 kb on - strandat 124.957 kb on + strandat 124.958 kb on - strandat 124.958 kb on - strandat 124.996 kb on + strandat 125.072 kb on - strand, within EX28DRAFT_0175at 125.119 kb on - strand, within EX28DRAFT_0175at 125.218 kb on + strand, within EX28DRAFT_0175at 125.356 kb on + strand, within EX28DRAFT_0175at 125.515 kb on - strand, within EX28DRAFT_0175at 125.557 kb on - strand, within EX28DRAFT_0175at 125.557 kb on - strand, within EX28DRAFT_0175at 125.580 kb on + strand, within EX28DRAFT_0175at 125.580 kb on + strand, within EX28DRAFT_0175at 125.581 kb on - strand, within EX28DRAFT_0175

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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123,130 + EX28DRAFT_0173 0.45 +0.0
123,131 - EX28DRAFT_0173 0.45 +0.1
123,142 + EX28DRAFT_0173 0.46 +0.8
123,142 + EX28DRAFT_0173 0.46 -0.1
123,143 - EX28DRAFT_0173 0.46 -0.6
123,143 - EX28DRAFT_0173 0.46 +0.9
123,143 - EX28DRAFT_0173 0.46 +0.2
123,143 - EX28DRAFT_0173 0.46 +0.3
123,143 - EX28DRAFT_0173 0.46 +2.3
123,188 + EX28DRAFT_0173 0.49 +0.6
123,188 + EX28DRAFT_0173 0.49 +0.6
123,205 + EX28DRAFT_0173 0.50 +0.1
123,205 + EX28DRAFT_0173 0.50 +1.1
123,206 - EX28DRAFT_0173 0.50 +0.0
123,206 - EX28DRAFT_0173 0.50 +0.7
123,648 + EX28DRAFT_0173 0.81 -2.7
123,839 + -0.8
123,896 + +0.3
123,896 + +1.4
123,897 - +1.3
123,905 - +1.6
123,905 - +1.4
123,908 + -0.3
123,908 + -0.7
123,908 + +0.3
123,951 + -0.2
123,952 - +0.1
123,985 - +0.6
124,113 - EX28DRAFT_0174 0.21 +0.7
124,202 - EX28DRAFT_0174 0.30 +0.2
124,302 + EX28DRAFT_0174 0.41 +0.3
124,510 + EX28DRAFT_0174 0.62 +1.1
124,511 - EX28DRAFT_0174 0.62 +1.9
124,511 - EX28DRAFT_0174 0.62 +0.6
124,511 - EX28DRAFT_0174 0.62 +1.3
124,511 - EX28DRAFT_0174 0.62 -0.0
124,578 + EX28DRAFT_0174 0.69 +1.6
124,660 + EX28DRAFT_0174 0.78 -2.4
124,735 + EX28DRAFT_0174 0.86 +2.0
124,875 + -1.5
124,876 - +0.4
124,952 - -0.0
124,957 + -0.9
124,958 - +0.6
124,958 - -2.1
124,996 + +0.2
125,072 - EX28DRAFT_0175 0.15 +1.3
125,119 - EX28DRAFT_0175 0.19 +0.2
125,218 + EX28DRAFT_0175 0.26 -0.8
125,356 + EX28DRAFT_0175 0.37 +1.0
125,515 - EX28DRAFT_0175 0.49 +0.3
125,557 - EX28DRAFT_0175 0.52 +0.2
125,557 - EX28DRAFT_0175 0.52 +1.3
125,580 + EX28DRAFT_0175 0.53 +0.6
125,580 + EX28DRAFT_0175 0.53 +0.6
125,581 - EX28DRAFT_0175 0.54 -0.3

Or see this region's nucleotide sequence