Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0154 and EX28DRAFT_0155 are separated by 11 nucleotides EX28DRAFT_0155 and EX28DRAFT_0156 are separated by 9 nucleotides EX28DRAFT_0156 and EX28DRAFT_0157 overlap by 35 nucleotides
EX28DRAFT_0154: EX28DRAFT_0154 - Uncharacterized protein conserved in bacteria, at 100,584 to 102,488
_0154
EX28DRAFT_0155: EX28DRAFT_0155 - Sugar phosphate isomerases/epimerases, at 102,500 to 103,390
_0155
EX28DRAFT_0156: EX28DRAFT_0156 - Uncharacterized enzyme involved in inositol metabolism, at 103,400 to 104,224
_0156
EX28DRAFT_0157: EX28DRAFT_0157 - Arabinose efflux permease, at 104,190 to 105,404
_0157
Position (kb) 102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 102.052 kb on - strand, within EX28DRAFT_0154 at 102.132 kb on + strand, within EX28DRAFT_0154 at 102.157 kb on - strand, within EX28DRAFT_0154 at 102.172 kb on - strand, within EX28DRAFT_0154 at 102.340 kb on + strand at 102.340 kb on + strand at 102.340 kb on + strand at 102.444 kb on + strand at 102.444 kb on + strand at 102.444 kb on + strand at 102.444 kb on + strand at 102.445 kb on - strand at 102.445 kb on - strand at 102.513 kb on + strand at 102.707 kb on + strand, within EX28DRAFT_0155 at 102.893 kb on + strand, within EX28DRAFT_0155 at 102.925 kb on + strand, within EX28DRAFT_0155 at 103.126 kb on + strand, within EX28DRAFT_0155 at 103.126 kb on + strand, within EX28DRAFT_0155 at 103.207 kb on + strand, within EX28DRAFT_0155 at 103.272 kb on - strand, within EX28DRAFT_0155 at 103.346 kb on + strand at 103.347 kb on - strand at 103.348 kb on + strand at 103.349 kb on - strand at 103.349 kb on - strand at 103.388 kb on + strand at 103.389 kb on - strand at 103.413 kb on + strand at 103.664 kb on + strand, within EX28DRAFT_0156 at 103.665 kb on - strand, within EX28DRAFT_0156 at 103.749 kb on - strand, within EX28DRAFT_0156 at 103.817 kb on + strand, within EX28DRAFT_0156 at 103.949 kb on + strand, within EX28DRAFT_0156 at 103.964 kb on + strand, within EX28DRAFT_0156 at 103.964 kb on + strand, within EX28DRAFT_0156 at 103.965 kb on - strand, within EX28DRAFT_0156 at 103.965 kb on - strand, within EX28DRAFT_0156 at 103.967 kb on + strand, within EX28DRAFT_0156 at 103.967 kb on + strand, within EX28DRAFT_0156 at 103.967 kb on + strand, within EX28DRAFT_0156 at 103.968 kb on - strand, within EX28DRAFT_0156 at 103.968 kb on - strand, within EX28DRAFT_0156 at 104.041 kb on + strand, within EX28DRAFT_0156 at 104.042 kb on - strand, within EX28DRAFT_0156 at 104.051 kb on + strand, within EX28DRAFT_0156 at 104.052 kb on - strand, within EX28DRAFT_0156 at 104.120 kb on + strand, within EX28DRAFT_0156 at 104.124 kb on - strand, within EX28DRAFT_0156 at 104.124 kb on - strand, within EX28DRAFT_0156 at 104.308 kb on + strand at 104.309 kb on - strand at 104.309 kb on - strand at 104.309 kb on - strand at 104.365 kb on + strand, within EX28DRAFT_0157 at 104.366 kb on - strand, within EX28DRAFT_0157 at 104.366 kb on - strand, within EX28DRAFT_0157
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 102,052 - EX28DRAFT_0154 0.77 -1.5 102,132 + EX28DRAFT_0154 0.81 -1.0 102,157 - EX28DRAFT_0154 0.83 +1.4 102,172 - EX28DRAFT_0154 0.83 -1.4 102,340 + -1.5 102,340 + -1.8 102,340 + -0.9 102,444 + -1.5 102,444 + -0.2 102,444 + +0.5 102,444 + -1.8 102,445 - +1.1 102,445 - +2.3 102,513 + -2.3 102,707 + EX28DRAFT_0155 0.23 -1.1 102,893 + EX28DRAFT_0155 0.44 +0.1 102,925 + EX28DRAFT_0155 0.48 -2.0 103,126 + EX28DRAFT_0155 0.70 -2.1 103,126 + EX28DRAFT_0155 0.70 -0.8 103,207 + EX28DRAFT_0155 0.79 -1.3 103,272 - EX28DRAFT_0155 0.87 -1.7 103,346 + -2.4 103,347 - +0.8 103,348 + +0.4 103,349 - -0.3 103,349 - -0.2 103,388 + +0.2 103,389 - -0.3 103,413 + -1.1 103,664 + EX28DRAFT_0156 0.32 -0.2 103,665 - EX28DRAFT_0156 0.32 +4.3 103,749 - EX28DRAFT_0156 0.42 +1.3 103,817 + EX28DRAFT_0156 0.51 -1.9 103,949 + EX28DRAFT_0156 0.67 -1.0 103,964 + EX28DRAFT_0156 0.68 -1.8 103,964 + EX28DRAFT_0156 0.68 +0.0 103,965 - EX28DRAFT_0156 0.68 -0.6 103,965 - EX28DRAFT_0156 0.68 +0.1 103,967 + EX28DRAFT_0156 0.69 -0.7 103,967 + EX28DRAFT_0156 0.69 -1.2 103,967 + EX28DRAFT_0156 0.69 -2.6 103,968 - EX28DRAFT_0156 0.69 +0.1 103,968 - EX28DRAFT_0156 0.69 -2.6 104,041 + EX28DRAFT_0156 0.78 -1.4 104,042 - EX28DRAFT_0156 0.78 +0.1 104,051 + EX28DRAFT_0156 0.79 -0.2 104,052 - EX28DRAFT_0156 0.79 -0.7 104,120 + EX28DRAFT_0156 0.87 -3.2 104,124 - EX28DRAFT_0156 0.88 +0.0 104,124 - EX28DRAFT_0156 0.88 -1.8 104,308 + -0.1 104,309 - +1.2 104,309 - +0.2 104,309 - +1.3 104,365 + EX28DRAFT_0157 0.14 +0.3 104,366 - EX28DRAFT_0157 0.14 +0.4 104,366 - EX28DRAFT_0157 0.14 -0.1
Or see this region's nucleotide sequence