Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0130 and EX28DRAFT_0131 are separated by 13 nucleotides EX28DRAFT_0131 and EX28DRAFT_0132 are separated by 10 nucleotides EX28DRAFT_0132 and EX28DRAFT_0133 are separated by 112 nucleotides
EX28DRAFT_0130: EX28DRAFT_0130 - histidyl-tRNA synthetase (EC 6.1.1.21), at 73,309 to 74,583
_0130
EX28DRAFT_0131: EX28DRAFT_0131 - Uncharacterized protein conserved in bacteria, at 74,597 to 75,217
_0131
EX28DRAFT_0132: EX28DRAFT_0132 - outer membrane assembly lipoprotein YfgL, at 75,228 to 76,406
_0132
EX28DRAFT_0133: EX28DRAFT_0133 - ribosome-associated GTPase EngA, at 76,519 to 77,991
_0133
Position (kb) 75
76
77 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 74.573 kb on + strand at 74.773 kb on + strand, within EX28DRAFT_0131 at 74.853 kb on - strand, within EX28DRAFT_0131 at 74.888 kb on + strand, within EX28DRAFT_0131 at 74.896 kb on + strand, within EX28DRAFT_0131 at 74.995 kb on + strand, within EX28DRAFT_0131 at 74.995 kb on + strand, within EX28DRAFT_0131 at 75.239 kb on + strand at 75.503 kb on - strand, within EX28DRAFT_0132 at 76.117 kb on - strand, within EX28DRAFT_0132 at 76.117 kb on - strand, within EX28DRAFT_0132 at 76.260 kb on + strand, within EX28DRAFT_0132 at 76.263 kb on - strand, within EX28DRAFT_0132 at 76.405 kb on - strand at 76.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 74,573 + -3.3 74,773 + EX28DRAFT_0131 0.28 -0.7 74,853 - EX28DRAFT_0131 0.41 -2.3 74,888 + EX28DRAFT_0131 0.47 -0.5 74,896 + EX28DRAFT_0131 0.48 +0.5 74,995 + EX28DRAFT_0131 0.64 +4.3 74,995 + EX28DRAFT_0131 0.64 +0.5 75,239 + -2.9 75,503 - EX28DRAFT_0132 0.23 -2.8 76,117 - EX28DRAFT_0132 0.75 +2.3 76,117 - EX28DRAFT_0132 0.75 -1.3 76,260 + EX28DRAFT_0132 0.88 -4.5 76,263 - EX28DRAFT_0132 0.88 -2.0 76,405 - -0.9 76,409 - +2.3
Or see this region's nucleotide sequence