Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0107 and EX28DRAFT_0108 are separated by 216 nucleotides EX28DRAFT_0108 and EX28DRAFT_0109 are separated by 6 nucleotides EX28DRAFT_0109 and EX28DRAFT_0110 are separated by 1 nucleotides
EX28DRAFT_0107: EX28DRAFT_0107 - RNA methyltransferase, TrmH family, group 1, at 47,921 to 48,646
_0107
EX28DRAFT_0108: EX28DRAFT_0108 - transcriptional regulator, BadM/Rrf2 family, at 48,863 to 49,354
_0108
EX28DRAFT_0109: EX28DRAFT_0109 - RNA, at 49,361 to 49,470
_0109
EX28DRAFT_0110: EX28DRAFT_0110 - cysteine desulfurase IscS, at 49,472 to 50,686
_0110
Position (kb) 48
49
50 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 48.255 kb on + strand, within EX28DRAFT_0107 at 48.256 kb on - strand, within EX28DRAFT_0107 at 48.309 kb on - strand, within EX28DRAFT_0107 at 48.392 kb on - strand, within EX28DRAFT_0107 at 48.446 kb on + strand, within EX28DRAFT_0107 at 48.477 kb on - strand, within EX28DRAFT_0107 at 48.594 kb on + strand at 48.637 kb on + strand at 48.644 kb on + strand at 48.644 kb on + strand at 48.645 kb on - strand at 48.877 kb on + strand at 48.877 kb on + strand at 48.952 kb on + strand, within EX28DRAFT_0108
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 48,255 + EX28DRAFT_0107 0.46 +0.7 48,256 - EX28DRAFT_0107 0.46 +0.0 48,309 - EX28DRAFT_0107 0.53 +0.1 48,392 - EX28DRAFT_0107 0.65 -1.9 48,446 + EX28DRAFT_0107 0.72 -1.3 48,477 - EX28DRAFT_0107 0.77 -0.4 48,594 + +0.1 48,637 + +2.8 48,644 + +2.2 48,644 + -0.4 48,645 - -0.1 48,877 + -2.7 48,877 + -0.5 48,952 + EX28DRAFT_0108 0.18 -1.2
Or see this region's nucleotide sequence