Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0006

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0004 and EX28DRAFT_0005 are separated by 341 nucleotidesEX28DRAFT_0005 and EX28DRAFT_0006 are separated by 32 nucleotidesEX28DRAFT_0006 and EX28DRAFT_0007 are separated by 10 nucleotidesEX28DRAFT_0007 and EX28DRAFT_0008 overlap by 4 nucleotidesEX28DRAFT_0008 and EX28DRAFT_0009 are separated by 17 nucleotides EX28DRAFT_0004: EX28DRAFT_0004 - Type IV leader peptidase family, at 1,411 to 1,923 _0004 EX28DRAFT_0005: EX28DRAFT_0005 - SSU ribosomal protein S10P, at 2,265 to 2,576 _0005 EX28DRAFT_0006: EX28DRAFT_0006 - 50S ribosomal protein L3, bacterial, at 2,609 to 3,238 _0006 EX28DRAFT_0007: EX28DRAFT_0007 - LSU ribosomal protein L4P, at 3,249 to 3,854 _0007 EX28DRAFT_0008: EX28DRAFT_0008 - LSU ribosomal protein L23P, at 3,851 to 4,153 _0008 EX28DRAFT_0009: EX28DRAFT_0009 - ribosomal protein L2, bacterial/organellar, at 4,171 to 4,992 _0009 Position (kb) 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 1.625 kb on - strand, within EX28DRAFT_0004at 1.677 kb on - strand, within EX28DRAFT_0004at 1.677 kb on - strand, within EX28DRAFT_0004at 1.698 kb on - strand, within EX28DRAFT_0004at 1.818 kb on + strand, within EX28DRAFT_0004at 1.994 kb on + strandat 1.995 kb on - strandat 1.995 kb on - strandat 2.027 kb on + strandat 2.028 kb on - strandat 2.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,625 - EX28DRAFT_0004 0.42 -1.9
1,677 - EX28DRAFT_0004 0.52 +1.0
1,677 - EX28DRAFT_0004 0.52 +0.0
1,698 - EX28DRAFT_0004 0.56 +0.2
1,818 + EX28DRAFT_0004 0.79 +0.7
1,994 + -0.2
1,995 - +2.3
1,995 - -1.6
2,027 + -1.7
2,028 - +0.1
2,028 - -0.6

Or see this region's nucleotide sequence